View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_2 (Length: 708)
Name: NF18033_high_2
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 31869652 - 31870339
Alignment:
| Q |
1 |
gatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataannnnnnncgatgttttaaatggcagtgtaaaggttacactacatttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869652 |
gatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataatttttttcgatgttttaaatggcagtgtaaaggttacactacatttgc |
31869751 |
T |
|
| Q |
101 |
cagcagacctttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtctgtgactgagatctgggcagcaacatcagggtttttgttgtta |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869752 |
cagcagacttttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtttgtgactgagatctgggcagcaacatcagggtttttgttgtta |
31869851 |
T |
|
| Q |
201 |
ctgtgactataattgagatagcatcggtcacatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaacgttacactacatt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869852 |
ctgtgactataattgagatagcatcggtcgcatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaacgttacactacatt |
31869951 |
T |
|
| Q |
301 |
accccgatgcatgtttaaagtttcaacatcaagcaaa-ctatacaaagccaatataaactaaaccgtgcacaattttgttttgttgttaagttacttttc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31869952 |
accccgatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaatttt-----gttgttaagttacttttc |
31870046 |
T |
|
| Q |
400 |
agcacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaagg |
499 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870047 |
aacacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaagg |
31870146 |
T |
|
| Q |
500 |
tttgtggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaa |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31870147 |
tttgtggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaa |
31870246 |
T |
|
| Q |
600 |
aatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaata |
692 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31870247 |
aatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaata |
31870339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 692
Target Start/End: Complemental strand, 8851693 - 8851534
Alignment:
| Q |
533 |
ccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatccctttaaccaattgaccagaaccggccgc |
632 |
Q |
| |
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||||||| |||||||||| || ||| ||||||| ||||||||| | ||||||||| ||||||||||||||||| || | || || ||||| || | || |
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| T |
8851693 |
ccatccttttcttcataacctgattcccccattgcaacctatccatagtaacatcaccacaccacaaaatccccttgatcacatgtccagaccccgaagc |
8851594 |
T |
|
| Q |
633 |
gatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaata |
692 |
Q |
| |
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|||| | |||| || || |||||||| ||||||||||| || ||||||||||||||||| |
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| T |
8851593 |
tatcatcctcgcagcagtcccactatactcctccacattcggtgccaatgtagtccaata |
8851534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 27878304 - 27878369
Alignment:
| Q |
537 |
cctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
602 |
Q |
| |
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|||||||||||| | |||| |||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
27878304 |
cctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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