View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_20 (Length: 354)
Name: NF18033_high_20
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 7906270 - 7905922
Alignment:
| Q |
1 |
ttccgctagagaaacttggaatgagcctagaagagtggaggggttggaacatgtgaaggtttgtggtgcttttgcttccggtgttgtttcgtgttgtgtt |
100 |
Q |
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| T |
7906270 |
ttcctctagagaaacttggaatgagcctagaagagtggaggggttggaacatgtgaatgtttgtggtgcttttgcttccggtgttgtttcgtgttgtgtt |
7906171 |
T |
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| Q |
101 |
ggtgatgatgggtctgcttgggtttgggggatgtccaaaaggggacagcttggacttggaaaacatgttactgaagctgttgtgccttctagagttgaag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7906170 |
ggtgatgatgggtctgtttgggtttgggggatgtccaaaaggggacagcttggacttggaaaacatgttactgaagctgttgtgccttctagagttgaag |
7906071 |
T |
|
| Q |
201 |
cactttctcgacaaaacgtagttaaggtactttagcttaattaagctttctttttctacaaccattgcataagttatgttacacgtgtccagcctaacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7906070 |
cactttctcgacaaaacgtagttaaggtactttagcttaattaagttttctttttctacaagcattgcataagttatgttacacgtgtccagcctaacaa |
7905971 |
T |
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| Q |
301 |
tatcaacattgtaagatcaagatgaaacatctccaatagtataatctac |
349 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
7905970 |
tatcaacattgtaagatcaagatgagacatctccaatagtataagctac |
7905922 |
T |
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