View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_21 (Length: 348)
Name: NF18033_high_21
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 38919569 - 38919888
Alignment:
| Q |
9 |
gagtgagaagaatgagtgcaagaggtgttgtagtggtgagtgccatgttggtaagttagtgaaggagaattaagatttgaagatgaggtttggtgagtat |
108 |
Q |
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| T |
38919569 |
gagtgagaagaatgagtgcaagaggtgttgtagtggtgagtgccatgttggtaagttagtgaaggagaattaagatttgaagatgaggtttggtgagtat |
38919668 |
T |
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| Q |
109 |
gtggagaggtggagaggggttttatttggagaggaatattattaataaggtaatttggttgagaatttgttggcatgagctggatcaaggctagcatata |
208 |
Q |
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| T |
38919669 |
gtggagaggtggagaggggttttatttggagaggaatattattaataaggtaatttggttgagaatttgttggcatgagctggatcaaggctagcatata |
38919768 |
T |
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| Q |
209 |
tcaatatattcccttagttgacaaatgaatacaaaaataaatcacatcaaagttgcaataaggaatgaagtttaacatttggttggaatgataagaaatt |
308 |
Q |
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| T |
38919769 |
tcaatatattcccttagttgacaaatgaatacaaaaataaatcacatcaaagttgcaataaggaatgaagtttaacatttggttggaatgataagaaatt |
38919868 |
T |
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| Q |
309 |
acatgttgtgttatatatgc |
328 |
Q |
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| T |
38919869 |
acatgttgtgttatatatgc |
38919888 |
T |
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