View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_26 (Length: 271)
Name: NF18033_high_26
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 49679425 - 49679197
Alignment:
| Q |
17 |
catagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcat |
116 |
Q |
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| T |
49679425 |
catagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagtttttcat |
49679326 |
T |
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| Q |
117 |
nnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtc |
216 |
Q |
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| T |
49679325 |
aaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtc |
49679226 |
T |
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| Q |
217 |
aataatggaaatagggttgccaatggacc |
245 |
Q |
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| T |
49679225 |
aataatggaaatagtgttgccaatggacc |
49679197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 49691059 - 49690829
Alignment:
| Q |
17 |
catagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcat |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49691059 |
catagggatgacaagaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcat |
49690960 |
T |
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| Q |
117 |
nnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtc |
216 |
Q |
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| T |
49690959 |
aaaaaaa-gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtc |
49690861 |
T |
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| Q |
217 |
aataatggaaatagggttgccaatggaccagt |
248 |
Q |
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| T |
49690860 |
aataatggaaatagtgttgccaatggaccagt |
49690829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 49686774 - 49686576
Alignment:
| Q |
33 |
actatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttccaaa |
132 |
Q |
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| T |
49686774 |
actatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaa-gttccaaa |
49686676 |
T |
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| Q |
133 |
aggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaataggg |
232 |
Q |
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| T |
49686675 |
aggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtg |
49686579 |
T |
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