View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_34 (Length: 230)
Name: NF18033_high_34
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 6285554 - 6285370
Alignment:
| Q |
29 |
gaaaaccaaaatctcgcttcaaaaagaatgctnnnnnnnnncttatccacgtcaatgttctgctttgacacaaaacctgcataaaaagtaattaaagttt |
128 |
Q |
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| T |
6285554 |
gaaaaccaaaatctcgcttcaaaaagaatgctaaaaataaacttatccacgtcaatgttctgctttgacacaaaacctgcataaaaagtaattaaagttt |
6285455 |
T |
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| Q |
129 |
atagaagtctttaaatgactgttaaagaagatttagaacctactagtagtccatatagtattaatcatgatctatgagtctttgt |
213 |
Q |
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| T |
6285454 |
atagaagtctttaaatgactgttaaagaagatttagaacctactagtagtccatatagtattaatcatgatctatgagtctttgt |
6285370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 6285604 - 6285565
Alignment:
| Q |
13 |
aagaatattattaaaagaaaaccaaaatctcgcttcaaaa |
52 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
6285604 |
aagaatattaataaaagaaaaccaaaatctcgcttcaaaa |
6285565 |
T |
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