View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_4 (Length: 630)
Name: NF18033_high_4
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 16 - 619
Target Start/End: Original strand, 3878872 - 3879475
Alignment:
| Q |
16 |
cacatgttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccc |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3878872 |
cacaggttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgttgcaacttcatgccc |
3878971 |
T |
|
| Q |
116 |
tcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878972 |
tcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattca |
3879071 |
T |
|
| Q |
216 |
tcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggcttttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879072 |
tcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggcttttc |
3879171 |
T |
|
| Q |
316 |
tcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagctcatagctcta |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879172 |
tcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagctcatagctcta |
3879271 |
T |
|
| Q |
416 |
tgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3879272 |
tgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacatttaaccaccccgccaatgcaggt |
3879371 |
T |
|
| Q |
516 |
tttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgct |
615 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879372 |
tttgtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaatattagattggcgtactgtcgcaagtatgtttctgct |
3879471 |
T |
|
| Q |
616 |
tcat |
619 |
Q |
| |
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|||| |
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| T |
3879472 |
tcat |
3879475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 619
Target Start/End: Original strand, 3864875 - 3865493
Alignment:
| Q |
16 |
cacatgttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccc |
115 |
Q |
| |
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|||| ||||| ||| ||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3864875 |
cacaagttgtgcttaattgccctcttctgcttgaacttgatatgggttcttgccacaaacttcctgatgctgctattcgtgctgctgcaacttcatgccc |
3864974 |
T |
|
| Q |
116 |
tcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattca |
215 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| || |
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| T |
3864975 |
tcaactagtgaaactggacatgcgtaattgttcttgtgtcagcgatgaaacactgcgtgaaatagcacaacattgtcctaatcttggttttcttgatgca |
3865074 |
T |
|
| Q |
216 |
tcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggct---- |
311 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||| |||| ||||||||||||| | ||| | | ||| |
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| T |
3865075 |
tcatactgcccaaacatatctttggaggtgtgctttaaactgtatact-tattttttgcatatttaagattgtattttgaacaagagtttctagctttgt |
3865173 |
T |
|
| Q |
312 |
--------------tttctcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctg |
397 |
Q |
| |
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||||| ||||||||| ||||| | |||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
3865174 |
ctgacacggtcacctttcttttttaagtctgttcgactcccaatgttgaccattctaagacttcatagctgtgagggcatcacttctgcgtcaatggctg |
3865273 |
T |
|
| Q |
398 |
ctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttat |
497 |
Q |
| |
|
| |||||||| || |||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| || | ||||| || |
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| T |
3865274 |
caatagctcacagttctatgttggaggtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtattaggacgagtacatgacat |
3865373 |
T |
|
| Q |
498 |
caccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgt |
597 |
Q |
| |
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| | |||||||||||||||| | || || ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
3865374 |
aa--ctgccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaatattagattggtgtactgt |
3865471 |
T |
|
| Q |
598 |
cgcaagtatgtttctgcttcat |
619 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
3865472 |
cgcaagtatgtttctgcttcat |
3865493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 8357532 - 8357452
Alignment:
| Q |
63 |
tcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgtaac |
143 |
Q |
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|||||| ||||||||||| |||||| ||| || | ||||||| ||||||||||| | | |||||| |||||||| ||||| |
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| T |
8357532 |
tcttgccacaaacttccttatgctgctatcggttcggctgcaagttcatgccctctattagtgaagatggacatgtgtaac |
8357452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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