View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_high_6 (Length: 550)
Name: NF18033_high_6
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 41131349 - 41131013
Alignment:
| Q |
19 |
tgaattgcttgtttctcccaatgtgttagtagtatttcttatgaattctttcatttattttgtttcaattattttgtcacaattctattggtagggtagt |
118 |
Q |
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| T |
41131349 |
tgaattgcttgtttctcccaatgtgttagtagtatttcttatgaattctttcatttattttgtttcaattattttgtcataattctattggtagggtagt |
41131250 |
T |
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| Q |
119 |
gatgaaaatgtcaaggacaagataaggtaagtaagaagttaagttttcttgcgttttgcacatttgacctgcggtgtaatccaatagtatcccttgnnnn |
218 |
Q |
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| T |
41131249 |
gatgaaaatgtcaaggacaagataaggtaagtaagaagttaagttttcttgcgttttgcacatttgacctgcggtgtaatccaatagtatcccttg-ttt |
41131151 |
T |
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| Q |
219 |
nnnnnnnnaatgtaattcaataatcaattactcatagagttaagaaagaaagttgaagctgaaagttgtaagaagtggagagagcaaagatgctagtggt |
318 |
Q |
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| T |
41131150 |
ttatttttaatgtaattcaataatcaattacccatagagttaagaaagaaagttgaagctgaaagttgtaagaagtggagagagcaaagatgctagtggt |
41131051 |
T |
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| Q |
319 |
gttaattataggctctccctttgcaataattctcacaa |
356 |
Q |
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| T |
41131050 |
gttaattataggctctccctttgcaataattctcacaa |
41131013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 41130942 - 41130828
Alignment:
| Q |
427 |
tgctaacctagtttacctcctctttgatatcgtctccaaatcataattactattatagtctcttccttcaaaacggtacgttccatctttcttatttggt |
526 |
Q |
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| T |
41130942 |
tgctaacctagtttacctcctctttgatatcgtctccaaatcataattactattatagtctcttccttcaaaacggtacgttccatctttcttatttaat |
41130843 |
T |
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| Q |
527 |
tttaataattatatt |
541 |
Q |
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| T |
41130842 |
ttttataattatatt |
41130828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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