View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18033_high_7 (Length: 545)
Name: NF18033_high_7
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_high_7 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 1282888 - 1283319
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1282888 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg |
1282987 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaa |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1282988 |
ttttgtgtttgcaaagttgaccatttttgataattctctacttggatgttatgcgtgcaagatatgaggttgagaaacaagtgataagcatgtgctttaa |
1283087 |
T |
|
| Q |
215 |
tagagaacaaaaaaggaagtggtccaaacagatcaaatctaggaggttctnnnnnnnggaaatacgttcacgtaactcaattattaatttggtgatcttt |
314 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1283088 |
tagagaacaaaaaaggaagaggttcaaacagataaaatctaggaggttctaaaaaaaggaaatacgttcacgtaactcaattattaatttggtgatcttt |
1283187 |
T |
|
| Q |
315 |
acaatgatatgaagcatggacatgcaaataagaacatggatgacgacattgacatctccatacaagtaataatttgaagnnnnnnnnntgaattaattga |
414 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1283188 |
acaatgatatgaagcatggacatataaataaggacatggatgatgacattgacatctccatacaagtaataatttgaa-aaaaaaaaatgaattaattga |
1283286 |
T |
|
| Q |
415 |
atgtaattacatgtatttggtctaataactaca |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
1283287 |
atgtaattacatgtgtttggtctaataactaca |
1283319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 1283365 - 1283438
Alignment:
| Q |
425 |
atgtatttggtctaataactacacatataggacactgaacacgtctttgatcagaagtgtcggtgctacaaagttaca |
502 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1283365 |
atgtgtttggtctaataactacacat----gatactgaacatgtctttgatcagaagtgtcggtactacaaagttaca |
1283438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 1502633 - 1502673
Alignment:
| Q |
454 |
ggacactgaacacgtctttgatcagaagtgtcggtgctaca |
494 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1502633 |
ggacacagaacacgtcttctatcagaagtgtcggtgctaca |
1502673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 1228 - 1418
Alignment:
| Q |
30 |
agcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggttttgtgtttgcaaa |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||| |
|
|
| T |
1228 |
agcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctgtttgcaaa |
1327 |
T |
|
| Q |
130 |
gtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaatagaga |
220 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1328 |
gtttcccatttttgataattatctatttggatgttatgtgtgcaagatatgaggttgagaaacaagtgataagcatgtgctttaatagaga |
1418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 1675991 - 1676181
Alignment:
| Q |
30 |
agcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggttttgtgtttgcaaa |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||| |
|
|
| T |
1675991 |
agcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctgtttgcaaa |
1676090 |
T |
|
| Q |
130 |
gtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaatagaga |
220 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1676091 |
gtttcccatttttgataattatctatttggatgttatgtgtgcaagatatgaggttgagaaacaagtgataagcatgtgctttaatagaga |
1676181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 20862483 - 20862380
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| | | ||| |||||||| |
|
|
| T |
20862483 |
caaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtgg |
20862384 |
T |
|
| Q |
115 |
tttt |
118 |
Q |
| |
|
|||| |
|
|
| T |
20862383 |
tttt |
20862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 2124 - 1908
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2124 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
2025 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaa |
214 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| | || |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2024 |
ttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgagaaacaagtgataagcatgtgctttaa |
1925 |
T |
|
| Q |
215 |
tagagaacaaaaaagga |
231 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
1924 |
tagaagaaaaaaaagga |
1908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 4618756 - 4618972
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4618756 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
4618855 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaa |
214 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| | || |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4618856 |
ttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgagaaacaagtgataagcatgtgctttaa |
4618955 |
T |
|
| Q |
215 |
tagagaacaaaaaagga |
231 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
4618956 |
tagaagaaaaaaaagga |
4618972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 4603565 - 4603773
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
4603565 |
caaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgttg |
4603664 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtg---ataagcatgtgctt |
211 |
Q |
| |
|
|||| |||||||||||||| ||||||| | ||||| |||| |||||| |||||||||||| |||||||||||| || ||||| |||||||||||| | |
|
|
| T |
4603665 |
ttttctgtttgcaaagtttcccattttagttaattttctatttggatattatgtgtgcaaaatatgaggttgaagaacaagtgataataagcatgtgcat |
4603764 |
T |
|
| Q |
212 |
taatagaga |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
4603765 |
taatagaga |
4603773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 4594465 - 4594683
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| |||| |||||||| |||||||||||| |
|
|
| T |
4594465 |
caaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtgg |
4594564 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttgga------tgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtg |
208 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||| |||||||||||| ||||||||| |||| | |
|
|
| T |
4594565 |
ttttctgtttgcaaagtttcccatctttgataattctcta-ttgaatgttattgttatgtgtgcaagatacgaggttgagaaacaagtgataaacatggg |
4594663 |
T |
|
| Q |
209 |
ctttaatagagaacaaaaaa |
228 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
4594664 |
ctttaatagagaaaaaaaaa |
4594683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 4565484 - 4565689
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||| | ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| |||| |||||||| |||||||||||| |
|
|
| T |
4565484 |
caaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtgg |
4565583 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtttaccatttttgataattctctacttggatgttatgtgtgcaagatatgaggttgagaaagaagtgataagcatgtgctttaa |
214 |
Q |
| |
|
|||| |||||||||| || |||| ||||| | || ||| ||| ||||||| |||||||||||||||||||| ||| |||||||| ||||||||||| | |
|
|
| T |
4565584 |
ttttctgtttgcaaaacttcccatctttgaaatttttctgtttgtatgttatttgtgcaagatatgaggttgaaaaacaagtgataggcatgtgctttta |
4565683 |
T |
|
| Q |
215 |
tagaga |
220 |
Q |
| |
|
|||||| |
|
|
| T |
4565684 |
tagaga |
4565689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 4507366 - 4507480
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| || || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4507366 |
caaaggttatgtgaaagcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtgg |
4507465 |
T |
|
| Q |
115 |
ttttgtgtttgcaaa |
129 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
4507466 |
ttttctctttgcaaa |
4507480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 4513652 - 4513540
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4513652 |
caaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtgg |
4513553 |
T |
|
| Q |
115 |
ttttgtgtttgca |
127 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
4513552 |
ttttctgcttgca |
4513540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 3173458 - 3173575
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| | | ||| |||||||| |
|
|
| T |
3173458 |
caaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg |
3173557 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtt |
132 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
3173558 |
ttttctctttgcaaagtt |
3173575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4558583 - 4558683
Alignment:
| Q |
18 |
aggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggttt |
117 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
4558583 |
aggttatgtgaaatcctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttt |
4558682 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
|
|
| T |
4558683 |
t |
4558683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 4462662 - 4462776
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| | |||| ||||||||| |||||||||||| |
|
|
| T |
4462662 |
caaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtgg |
4462761 |
T |
|
| Q |
115 |
ttttgtgtttgcaaa |
129 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4462762 |
ctttgtctttgcaaa |
4462776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 4471369 - 4471483
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4471369 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
4471468 |
T |
|
| Q |
115 |
ttttgtgtttgcaaa |
129 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4471469 |
ctttgtctttgcaaa |
4471483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 4482320 - 4482437
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||| |
|
|
| T |
4482320 |
caaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtgg |
4482419 |
T |
|
| Q |
115 |
ttttgtgtttgcaaagtt |
132 |
Q |
| |
|
|||| | | ||||||||| |
|
|
| T |
4482420 |
ttttttttctgcaaagtt |
4482437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 4258849 - 4258750
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||| ||| ||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4258849 |
caaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg |
4258750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 4612386 - 4612287
Alignment:
| Q |
20 |
gttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggttttg |
119 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| |
|
|
| T |
4612386 |
gttatgtgaaagcctctaaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtggttttg |
4612287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4627605 - 4627704
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
4627605 |
caaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtgg |
4627704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4623762 - 4623861
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||| || ||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
4623762 |
caaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg |
4623861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4572424 - 4572524
Alignment:
| Q |
18 |
aggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggttt |
117 |
Q |
| |
|
||||||||| ||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| || | ||||||||||||||| |
|
|
| T |
4572424 |
aggttatgtgaaaacctctaaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttt |
4572523 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
|
|
| T |
4572524 |
t |
4572524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4517795 - 4517894
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||| |||||||| |
|
|
| T |
4517795 |
caaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 4255481 - 4255395
Alignment:
| Q |
28 |
aaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
4255481 |
aaagcctttaagatgaagtaattttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 4265730 - 4265616
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||| |||| |||||||||| |||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
4265730 |
caaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtgg |
4265631 |
T |
|
| Q |
115 |
ttttgtgtttgcaaa |
129 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
4265630 |
ctttggctttgcaaa |
4265616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 4569525 - 4569607
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatgga |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
4569525 |
caaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgga |
4569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 4587087 - 4587191
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |||| || | ||||||||| || |
|
|
| T |
4587087 |
caaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgagg |
4587186 |
T |
|
| Q |
115 |
ttttg |
119 |
Q |
| |
|
||||| |
|
|
| T |
4587187 |
ttttg |
4587191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4575910 - 4576009
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||| ||||| ||||| | | ||| |||||||| |
|
|
| T |
4575910 |
caaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtgg |
4576009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 4488870 - 4488789
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatgg |
96 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
4488870 |
caaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatgg |
4488789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4581469 - 4581568
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||||||| | | |||||| ||||||| |||||| |||||||||||||| ||| |||||||| |
|
|
| T |
4581469 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtgg |
4581568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 4497899 - 4497850
Alignment:
| Q |
34 |
tctaaggtgaagtagttttgctagtttgaacaatggattgatatggcctt |
83 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggcctt |
4497850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4599620 - 4599721
Alignment:
| Q |
17 |
aaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtggtt |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||||||||| ||| ||||||||| |||||| ||| ||||||||| || |||||| ||| |
|
|
| T |
4599620 |
aaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgatatttccttgaattggtaatggaatcaatactgcatgtagtt |
4599719 |
T |
|
| Q |
117 |
tt |
118 |
Q |
| |
|
|| |
|
|
| T |
4599720 |
tt |
4599721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 4493415 - 4493463
Alignment:
| Q |
70 |
attgatatggccttgagctggatatggaatcatcacagcatgtggtttt |
118 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
4493415 |
attgatatgaccttgagctggaaatggaatcaacactgcatgtggtttt |
4493463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 4472616 - 4472675
Alignment:
| Q |
70 |
attgatatggccttgagctggatatggaatcatcacagcatgtggttttgtgtttgcaaa |
129 |
Q |
| |
|
||||||||||||||| | |||| ||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
4472616 |
attgatatggccttggggtggacatggaatcaacactgcatgtggttttgtcattgcaaa |
4472675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 499
Target Start/End: Original strand, 30600623 - 30600664
Alignment:
| Q |
458 |
actgaacacgtctttgatcagaagtgtcggtgctacaaagtt |
499 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
30600623 |
actgaacacgcctttgataagaagtgtcagtgctacaaagtt |
30600664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 2279 - 2393
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
2279 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg |
2378 |
T |
|
| Q |
115 |
ttttgtgtttgcaaa |
129 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
2379 |
ttttttgtttgcaaa |
2393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 3088200 - 3088299
Alignment:
| Q |
15 |
caaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatgtgg |
114 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
3088200 |
caaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg |
3088299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 497
Target Start/End: Original strand, 7894765 - 7894799
Alignment:
| Q |
463 |
acacgtctttgatcagaagtgtcggtgctacaaag |
497 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
7894765 |
acacgtctttcatcagaagtgtcggtgctacaaag |
7894799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 24104552 - 24104646
Alignment:
| Q |
17 |
aaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcatcacagcatg |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||| ||||||||||||||| ||||||||| |||||| |||| |||||||| ||||||||| |
|
|
| T |
24104552 |
aaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatg |
24104646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 14010734 - 14010774
Alignment:
| Q |
457 |
cactgaacacgtctttgatcagaagtgtcggtgctacaaag |
497 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14010734 |
cactgaacacatctttgatcagaagtgtcggtgctacaaag |
14010774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 494
Target Start/End: Original strand, 41427737 - 41427767
Alignment:
| Q |
464 |
cacgtctttgatcagaagtgtcggtgctaca |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41427737 |
cacgtctttgatcagaagtgtcggtgctaca |
41427767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 497
Target Start/End: Original strand, 4785052 - 4785086
Alignment:
| Q |
463 |
acacgtctttgatcagaagtgtcggtgctacaaag |
497 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4785052 |
acacgtcttcgatcagaagtgtcggtgctacaaag |
4785086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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