View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_10 (Length: 521)
Name: NF18033_low_10
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_10 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 505
Target Start/End: Complemental strand, 6297 - 5792
Alignment:
| Q |
15 |
cataggacaacttttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgagg |
114 |
Q |
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| T |
6297 |
cataggacaacttttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgagg |
6198 |
T |
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| Q |
115 |
ccacccaatatgtatatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagc |
214 |
Q |
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| T |
6197 |
ccacccaatatgtatatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagc |
6098 |
T |
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| Q |
215 |
aacactttccccaaaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagcagctgagcctggtgat |
314 |
Q |
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| T |
6097 |
aacacttcccccaaaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagtagctgagcctggtgat |
5998 |
T |
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| Q |
315 |
ggaggagttgcatcgggcccagtgggagatgacggcgaaggtgttcctccgttggtaggtggagtaggagtagttcctgatgtaggaggagtagatg--- |
411 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5997 |
ggaggagttgcatcgggcccagtgggagatgacggtgaaggtgttcctccgttggtaggtggagtaggagtagttcctgatgtaggaggagtagatgtag |
5898 |
T |
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| Q |
412 |
------------taggtggtgtaggagaaggaggagaaggtgtggaagctgagactttaacgcttagcttttggtcaccggaacaatggccttgaatggt |
499 |
Q |
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| T |
5897 |
gaggagtagatgtaggtggagtaggagaaggaggtgaaggtgtggaagctgagactttaacgcttagcttttggccactggaacaatggccttgaatggt |
5798 |
T |
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| Q |
500 |
acatat |
505 |
Q |
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| T |
5797 |
acatat |
5792 |
T |
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