View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18033_low_12 (Length: 473)
Name: NF18033_low_12
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 52 - 430
Target Start/End: Complemental strand, 30393566 - 30393181
Alignment:
| Q |
52 |
acaatgtactaataagttagttgtacttaagttttattgttgattataattaactttcatcgatataaacatttgtatgaacaattttctcattccctnn |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30393566 |
acaatgtactaataagttagttgtacttaagttttattgttgattataattaactttcatcgatataaacatttgtatgaacaattttctcattccctaa |
30393467 |
T |
|
| Q |
152 |
nnnnn-ttgacaattttctcgtaatcacacaattggta------cttctttttctttactaacctaaggcaaacatttaattagcacttttgatgggctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30393466 |
aaaaaattgacaattttctcgtaatcacacaattggtaggagtacttctttttctttactaacctaaggcaaacatttaattagcacttttgatgggctt |
30393367 |
T |
|
| Q |
245 |
ttgctttttagtattgaagttaaaccctagaatgttaccttccttgggtactttattattaaatttattgtttgaaaaatacttgattaagttactagaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30393366 |
ttgctttttagtattgaagttaaaccctagaatgttaccttccttgggtacttcattattaaatttattgtttgaaaaatacttgattaagttactagaa |
30393267 |
T |
|
| Q |
345 |
atatttgatattattgtatctgaatccaccacacagttatgacaagatgagnnnnnnnnnagtatctatagatagttaaattatag |
430 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30393266 |
atatttgatattattgtatctgaattcaccacacagttatgacaagatgagtttttttttagtatctatagatagttaaattatag |
30393181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30393639 - 30393583
Alignment:
| Q |
13 |
attattctaactccaatacatcgaacatttatgaaatctacaatgtactaataagtt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30393639 |
attattctaactccaatacatcgaacatttatgaaatctacaatgtactaataagtt |
30393583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University