View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_13 (Length: 469)
Name: NF18033_low_13
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 173 - 459
Target Start/End: Original strand, 9736290 - 9736580
Alignment:
| Q |
173 |
taacattattacaacttattgtacagaaaaagcattgcaacaacttatgataataaatttttctcacaagaatataattaattttagtaactta---gnn |
269 |
Q |
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| T |
9736290 |
taacattattacaacttattgtacagaaaaagcattgcaacaacttatgataataaatttttctcacaagaatataattaattttagtaacttataagtt |
9736389 |
T |
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| Q |
270 |
nnnnnattagctacttctcatttggggaaatatgaatcatacaaggtgaactcttccttctcaactgaattttcatcatatgcaagagtcagagatcaaa |
369 |
Q |
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| T |
9736390 |
tttttattagctacttcttatttggggaaatatgaatcatacaaggtgaactcttccttctcaactgaattttcatcatatgcaagagtcagagatcaaa |
9736489 |
T |
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| Q |
370 |
catttgaacacttatttaaaaaattcaagtctcttatcagttgaacaaattcatcgttgatgttgccttt-gtatcctagtattacctttg |
459 |
Q |
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| T |
9736490 |
catttaaacacttatttaaaagattcaagtctcttaccagttgaacaaattcatcgttgatgttacctttggtatcctagtattacctttg |
9736580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 9735970 - 9736125
Alignment:
| Q |
17 |
aaagggaccctttacaacttatgttcaatcggcaccattatgccccatgagttgt-------aagagattgaacttactttttaatgggaaccaccacaa |
109 |
Q |
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| T |
9735970 |
aaagggaccctttacaacttatgttcaatcggcaccattatgccccatgagttgtaacttgtaagagattgaacttactttttaatgggaaccaccacaa |
9736069 |
T |
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| Q |
110 |
gaggaaccatgcccctccttttcgaatctacactattttaatggattttagcatat |
165 |
Q |
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| T |
9736070 |
gaggaaccatgcccctccttttcgaatctacactattttaatggattttaccatat |
9736125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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