View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18033_low_15 (Length: 410)

Name: NF18033_low_15
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18033_low_15
NF18033_low_15
[»] chr8 (18 HSPs)
chr8 (45-392)||(26254649-26254998)
chr8 (1-132)||(41260497-41260636)
chr8 (1-132)||(28254662-28254801)
chr8 (1-132)||(35427048-35427187)
chr8 (1-132)||(9796897-9797036)
chr8 (3-132)||(35694043-35694180)
chr8 (1-132)||(34799316-34799458)
chr8 (1-132)||(5731052-5731187)
chr8 (41-130)||(15256052-15256141)
chr8 (1-128)||(6115351-6115485)
chr8 (1-132)||(18049827-18049966)
chr8 (1-132)||(7910853-7910991)
chr8 (37-132)||(42036008-42036102)
chr8 (7-84)||(599709-599794)
chr8 (69-132)||(18428008-18428071)
chr8 (76-132)||(2208951-2209007)
chr8 (1-36)||(9929996-9930031)
chr8 (1-36)||(35163869-35163904)
[»] chr4 (20 HSPs)
chr4 (1-132)||(26974520-26974659)
chr4 (1-132)||(6616908-6617047)
chr4 (1-132)||(14439999-14440138)
chr4 (1-132)||(34789618-34789757)
chr4 (1-132)||(54440740-54440879)
chr4 (1-130)||(45838718-45838855)
chr4 (1-132)||(28465252-28465391)
chr4 (1-132)||(33777858-33777997)
chr4 (1-132)||(46736826-46736965)
chr4 (1-132)||(12593259-12593398)
chr4 (1-132)||(24851701-24851840)
chr4 (1-132)||(35643803-35643942)
chr4 (1-132)||(21034472-21034611)
chr4 (1-132)||(36168503-36168641)
chr4 (35-115)||(34807352-34807432)
chr4 (1-84)||(55677241-55677332)
chr4 (1-32)||(4219728-4219759)
chr4 (1-36)||(41608546-41608581)
chr4 (1-36)||(56077538-56077573)
chr4 (1-37)||(28166175-28166211)
[»] chr6 (7 HSPs)
chr6 (1-132)||(31073378-31073517)
chr6 (1-132)||(29891251-29891390)
chr6 (1-132)||(5114704-5114843)
chr6 (1-128)||(30250862-30250997)
chr6 (1-132)||(31573961-31574100)
chr6 (35-132)||(25472225-25472322)
chr6 (56-132)||(28636431-28636507)
[»] chr2 (24 HSPs)
chr2 (1-132)||(32418328-32418467)
chr2 (1-132)||(11539874-11540013)
chr2 (1-132)||(13399591-13399730)
chr2 (1-132)||(20127973-20128112)
chr2 (1-132)||(43160181-43160320)
chr2 (1-132)||(22445811-22445947)
chr2 (1-132)||(6949688-6949827)
chr2 (1-132)||(33920783-33920922)
chr2 (1-132)||(43215945-43216084)
chr2 (1-132)||(4809050-4809189)
chr2 (1-132)||(15550845-15550984)
chr2 (1-132)||(38008122-38008261)
chr2 (1-133)||(4355926-4356067)
chr2 (1-132)||(44219880-44220018)
chr2 (1-132)||(16953174-16953309)
chr2 (1-98)||(5560820-5560925)
chr2 (1-132)||(63193-63333)
chr2 (1-73)||(649697-649777)
chr2 (41-132)||(25335843-25335934)
chr2 (1-132)||(42192476-42192617)
chr2 (58-132)||(13315733-13315807)
chr2 (1-32)||(11539809-11539840)
chr2 (1-36)||(16175689-16175724)
chr2 (1-32)||(28143374-28143405)
[»] chr7 (16 HSPs)
chr7 (1-132)||(26026489-26026628)
chr7 (1-132)||(27245375-27245514)
chr7 (1-129)||(25637369-25637505)
chr7 (1-132)||(5745875-5746014)
chr7 (1-132)||(35161037-35161176)
chr7 (1-132)||(7732659-7732798)
chr7 (1-132)||(26048183-26048322)
chr7 (1-132)||(48247762-48247901)
chr7 (1-132)||(5334041-5334180)
chr7 (1-132)||(16081535-16081674)
chr7 (1-108)||(28687760-28687874)
chr7 (1-129)||(787022-787157)
chr7 (41-132)||(14311506-14311597)
chr7 (41-116)||(39387287-39387362)
chr7 (1-108)||(11973662-11973777)
chr7 (1-37)||(4478039-4478075)
[»] chr3 (26 HSPs)
chr3 (1-132)||(14654427-14654566)
chr3 (1-132)||(32730560-32730699)
chr3 (1-132)||(38535531-38535670)
chr3 (1-132)||(44676643-44676782)
chr3 (1-132)||(330072-330211)
chr3 (1-132)||(51828711-51828850)
chr3 (41-132)||(16689528-16689619)
chr3 (1-132)||(41998466-41998605)
chr3 (1-132)||(49720542-49720681)
chr3 (1-132)||(51473026-51473165)
chr3 (1-132)||(51828128-51828267)
chr3 (1-132)||(55389833-55389972)
chr3 (45-132)||(49951782-49951869)
chr3 (1-132)||(39010245-39010383)
chr3 (1-132)||(46013593-46013732)
chr3 (1-132)||(40275331-40275469)
chr3 (5-94)||(43678558-43678655)
chr3 (41-132)||(40838871-40838962)
chr3 (1-132)||(52375563-52375706)
chr3 (1-114)||(34104902-34105023)
chr3 (1-84)||(34104808-34104899)
chr3 (1-36)||(25535062-25535097)
chr3 (1-36)||(27200032-27200067)
chr3 (1-32)||(37727100-37727131)
chr3 (1-35)||(17464831-17464865)
chr3 (41-130)||(43222628-43222716)
[»] chr1 (22 HSPs)
chr1 (1-132)||(30786943-30787082)
chr1 (1-132)||(34555552-34555691)
chr1 (1-132)||(9992391-9992530)
chr1 (1-132)||(10278720-10278859)
chr1 (1-132)||(16298853-16298992)
chr1 (1-132)||(37505304-37505443)
chr1 (1-132)||(50304953-50305092)
chr1 (5-128)||(1744502-1744633)
chr1 (1-132)||(29439102-29439241)
chr1 (1-130)||(44582228-44582365)
chr1 (1-132)||(4080192-4080332)
chr1 (1-132)||(44954462-44954601)
chr1 (37-132)||(17641601-17641695)
chr1 (1-132)||(443787-443926)
chr1 (63-132)||(21938799-21938868)
chr1 (41-132)||(1837725-1837815)
chr1 (1-73)||(23340354-23340434)
chr1 (1-37)||(29869791-29869827)
chr1 (1-36)||(37421333-37421368)
chr1 (1-32)||(45048325-45048356)
chr1 (1-36)||(52335850-52335885)
chr1 (91-132)||(34011560-34011601)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-132)||(46438-46577)
[»] chr5 (10 HSPs)
chr5 (1-132)||(18149959-18150098)
chr5 (1-132)||(21370932-21371071)
chr5 (1-132)||(38900813-38900952)
chr5 (1-98)||(14340678-14340782)
chr5 (1-132)||(5161819-5161953)
chr5 (1-86)||(28289855-28289948)
chr5 (57-132)||(8418856-8418931)
chr5 (41-128)||(15029533-15029620)
chr5 (1-114)||(22651599-22651720)
chr5 (56-132)||(19291592-19291668)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-132)||(6628-6766)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-132)||(6646-6784)
[»] scaffold0025 (1 HSPs)
scaffold0025 (41-115)||(84419-84493)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 45 - 392
Target Start/End: Original strand, 26254649 - 26254998
Alignment:
Q  45 tactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgttttagagaataa 144  Q
    ||||||||||||||||||||| || ||||||  |||||| ||||| | |||||||||||||||| | |||||||||||||||||||||||||||||| ||    
T  26254649 tactttgttcagcacacaaacaaaaaaaaattataattttcacgacaggtttcatgtatgtaacatatctcgaaaattaggttagtgttttagagaagaa 26254748  T
Q  145 aacaagttattcaaacttggatcagatcatcaacaacaccaatcaattcaatgacgaagactttgtgtttgggtcttt-ggataccccttttaatactcc 243  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  26254749 aacaagttattcaaacttggatcacatcatcaacaacaccaatcaattcaatgccgaagactttgtgtttgggtctttgggataccccttttaatactcc 26254848  T
Q  244 ttcactcttccgctttgaatttgagttacatttctaaattctctcacc-aaccaaacaaacatgaaaaaacaacaacttatcttcccttttacaatttca 342  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  26254849 ttcactcttccgctttgaatttgagttacatttctcaattctctcaccaaaccaaacaaacatgaaaaaacaacaacttatcttccctctcacaatttca 26254948  T
Q  343 ttctgtctcactctcctcattgtttcagctcgtctatttcccgacgtccc 392  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26254949 ttctctctcactctcctcattgtttcagctcgtctatttcccgacgtccc 26254998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41260636 - 41260497
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  41260636 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaagaaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 41260537  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| | ||||| ||||||||| |||||    
T  41260536 gtttcaggtatgtaacatatctcggaaattaggtcagtgt 41260497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28254801 - 28254662
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||| |||||| |||||||||||        ||| ||||||||| |||||||||||||||||||||||| ||||||||| | || ||    
T  28254801 tatgctcaaccatgaaagaaacaaagaataaatcatgtgggtacaaggaatctacttcgttcagcacacaaaccaagaaaaaccctaatttctaagacat 28254702  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  28254701 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 28254662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35427187 - 35427048
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||| |||||||||||||| ||||||||||||||| ||||||||| | || ||    
T  35427187 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatatactttgttcagcagacaaaccaagaaaaaccctaatttctaagacat 35427088  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  35427087 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 35427048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9796897 - 9797036
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||| |||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| |  | ||    
T  9796897 tatgctcaaccataaaataaacaaggaataaatcatgtgggtgcaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaaaacat 9796996  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| | ||||| |||||||||||||||    
T  9796997 gtttcaggtatgtaacatatctcggaaattaggttagtgt 9797036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 35694043 - 35694180
Alignment:
Q  3 tgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgt 94  Q
    |||||||||||||||||||||| |||||||||||        ||| ||||||||||||||| |||||||||||||||||| ||||||||| | || ||||    
T  35694043 tgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcatcacacaaaccaagaaaaaccctaatttctatgacatgt 35694142  T
Q  95 ttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||  ||||||||| ||||||  |||||||||||||||    
T  35694143 ttcgggtatgtaacatgtctcagaaattaggttagtgt 35694180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34799458 - 34799316
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgata- 91  Q
    |||||||||||||||||||||||| || ||||||||        ||| ||||||||||||||||||||||||||||||||||| |||||||| | || |     
T  34799458 tatgctcaaccatgaaataaacaaggactaaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaattctaatttctaagacat 34799359  T
Q  92 --tgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
      ||||||| ||||||||| ||||||| |||||||||||||||    
T  34799358 attgtttcaggtatgtaacatgtctcggaaattaggttagtgt 34799316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5731187 - 5731052
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata--------agaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||||||        || |||||||||||||||||||||||||||||||||| ||||| ||| | || ||    
T  5731187 tatgctcaaccatgaaataaacaaggaataaatcatatgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaaattctaagacat 5731088  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||    |||||||| ||||||| |||||||||||||||    
T  5731087 gttt----tatgtaacatgtctcggaaattaggttagtgt 5731052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 15256052 - 15256141
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagt 130  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | || |||||||| ||||||||| |||||  ||||||||||||||    
T  15256052 aatctactttgttcaacacacaaaccaagaaaaatcctaatttctaagacatgtttcaggtatgtaacatgtctaaaaaattaggttagt 15256141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6115485 - 6115351
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga--------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||| |||||||||||||||||| |||||||||||  ||        |||||||||||||||||||||||||||| ||||| ||||||||| | || ||    
T  6115485 tatgcccaaccatgaaataaacaacgaataaatcatgtgagtaaaatgaatctactttgttcagcacacaaaccaaaaaaaa-cctaatttctaagacat 6115387  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggtta 128  Q
    |||||| ||||||||| ||||||| |||||||||||    
T  6115386 gtttcaggtatgtaacatgtctcggaaattaggtta 6115351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18049966 - 18049827
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||  ||||||||||||||||||| | ||||||| |  | ||    
T  18049966 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttacgcacacaaaccaagaaaaaccttaatttctaaaacat 18049867  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  18049866 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 18049827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7910991 - 7910853
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||| |||        ||| ||||||||||||| ||||||||| |||| ||||| | ||||||| | || ||    
T  7910991 tatgctcaaccatgaaataaacaaggaataaaacatgtgggtacaaggaatctactttgtttagcacacaatccaaaaaaaaac-taatttctaagacat 7910893  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  7910892 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 7910853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 42036102 - 42036008
Alignment:
Q  37 aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||||||||||||||||||||| | || ||||| ||||||||| | || |||||||| ||||||||  ||||||  |||||||||||||||    
T  42036102 aagaaatctactttgttcagcacacaa-ctaaaaaaaaacctaatttctaagacatgtttcaggtatgtaatatgtctcagaaattaggttagtgt 42036008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 599709 - 599794
Alignment:
Q  7 caaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttc 84  Q
    |||||||||||||||||| |||||||||||        ||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  599709 caaccatgaaataaacaaggaataaatcatgtgggtacaaggaatcttctttgttcagcacacaaaccaagaaaaaccctaatttc 599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18428008 - 18428071
Alignment:
Q  69 gaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||| | || |||||||| ||||||||| |||||| | ||||||||||||||    
T  18428008 gaaaaatcctaatttctaagacatgtttcaggtatgtaacatgtctcaagaattaggttagtgt 18428071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 2209007 - 2208951
Alignment:
Q  76 cctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||| | ||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  2209007 cctaatttctaagatatgtttcaggtatgtaacatgtttcggaaattaggttagtgt 2208951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9930031 - 9929996
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9930031 tatgctcaaccatgaaataaacaaggaataaatcat 9929996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35163869 - 35163904
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  35163869 tatgctcaaccatgaaataaacaaagaataaatcat 35163904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26974659 - 26974520
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| | || ||    
T  26974659 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttctaagacat 26974560  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  26974559 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 26974520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6617047 - 6616908
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  6617047 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaagaaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 6616948  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  6616947 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 6616908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 14439999 - 14440138
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata--------agaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||||||        || |||||||||||||||||||||||| ||||||||| ||||||||| | || ||    
T  14439999 tatgctcaaccatgaaataaacaaggaataaatcatatgggtacaaggaatctactttgttcagcacacaaatcaagaaaaaccctaatttctaagacat 14440098  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  14440099 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 14440138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34789757 - 34789618
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||| |||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  34789757 tatgctcaaccatgaaataaacaaagaataaaacatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 34789658  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  34789657 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 34789618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 54440740 - 54440879
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||| ||||||||| ||||||||| | || ||    
T  54440740 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaatcaagaaaaaccctaatttctaagacat 54440839  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  54440840 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 54440879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 45838718 - 45838855
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||  |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  45838718 tatgctcaaccatgaaataaacaaggaataaatcatgtaggtacaaagaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 45838817  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagt 130  Q
    |||||| ||||||||| ||||||| |||||||||||||    
T  45838818 gtttcaggtatgtaacatgtctcggaaattaggttagt 45838855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 28465252 - 28465391
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||| |||        ||| |||||||||||||||||||| ||||||||||||| ||||||||| | || ||    
T  28465252 tatgctcaaccatgaaataaacaaggaataaaacatgtgggtacaaggaatctactttgttcagcacataaaccaagaaaaaccctaatttctaagacat 28465351  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  28465352 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 28465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 33777997 - 33777858
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||||||||||| |||||||||||||||||||| | ||||||| | || ||    
T  33777997 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgtttagcacacaaaccaagaaaaaccttaatttctaagacat 33777898  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  33777897 gtttcaggtatgtaacctgtctcggaaattaggttagtgt 33777858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46736826 - 46736965
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||| ||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  46736826 tatgttcaaccatgaaataaacaaggaataaattatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 46736925  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  46736926 gtttcacgtatgtaacatgtctcggaaattaggttagtgt 46736965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 12593398 - 12593259
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||| || |||||||||||        ||| ||||||||||||||| |||||||||||||||||| ||||||||| | || ||    
T  12593398 tatgctcaaccatgaaataaataaggaataaatcatgtgggtacaaggaatctactttgttcaacacacaaaccaagaaaaaccctaatttctaagacat 12593299  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||| | ||||||||| ||||||| |||||||||||||||    
T  12593298 gtttgaggtatgtaacatgtctcggaaattaggttagtgt 12593259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24851840 - 24851701
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||  ||||||||  | || ||    
T  24851840 tatgctcaaccatgaaataaacaaggaataaatcatgttggtacaaggaatctactttgttcagcacacaaaccaagaaaacccctaatttataagacat 24851741  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||| ||||    
T  24851740 gtttcaggtatgtaacatgtctcggaaattaggtttgtgt 24851701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35643942 - 35643803
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||||||||||||||||||||||||||||||||    |||||| | || ||    
T  35643942 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaaaaaaatttctaagacat 35643843  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  35643842 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 35643803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21034611 - 21034472
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||| ||||| |||||||||||        ||| |||||||||||||| ||||||||||||||||||| ||||||||| | || ||    
T  21034611 tatgctcaaccatgaaatgaacaaggaataaatcatgtgggtacaaggaatctactttgttcggcacacaaaccaagaaaaaccctaatttctaagacat 21034512  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
     |||||  |||||||| ||||||| |||||||||||||||    
T  21034511 atttcagatatgtaacatgtctcggaaattaggttagtgt 21034472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36168503 - 36168641
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatc--------ataagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| |||| |||||||||||||| |||||||||        ||||| ||||||||||||||||||||||| |||||||||| ||||||||| |  | ||    
T  36168503 tatgttcaatcatgaaataaacaaggaataaatcttgtgggtataaggaatctactttgttcagcacacaa-ccaagaaaaaccctaatttctaatacat 36168601  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| | ||||||||||||| |||||||    
T  36168602 gtttcaagtatgtaacatatctcgaaaattagattagtgt 36168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 34807352 - 34807432
Alignment:
Q  35 ataagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctc 115  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||  | || |||||||| ||||||||| ||||||    
T  34807352 ataaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttttaagacatgtttcaggtatgtaacatgtctc 34807432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 55677332 - 55677241
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttc 84  Q
    |||||||||||||||||||||||| |||||||||||        || ||||||||||||||||||||||||||||||||||  |||||||||    
T  55677332 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaaaaatctactttgttcagcacacaaaccaagaaaagccctaatttc 55677241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4219728 - 4219759
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  4219728 tatgctcaaccatgaaataaacaatgaataaa 4219759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41608546 - 41608581
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  41608546 tatgctcaaccatgaaataaacaaggaataaatcat 41608581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 56077538 - 56077573
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  56077538 tatgctcaaccatgaaataaacaaggaataaatcat 56077573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28166175 - 28166211
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  28166175 tatgctcaaccatgaaataaacaaagaataaaacata 28166211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31073517 - 31073378
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||| ||||||||| | || ||    
T  31073517 tatgctcaaccatgaaataaacaatgaataaatcatgtgggtacaagaaatctactttgttcagcacataaaccaagaaaaaccctaatttctaagacat 31073418  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  31073417 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 31073378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29891251 - 29891390
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||| | || ||    
T  29891251 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaatcctaatttctaagacat 29891350  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| | ||||||| ||||||| |||||||||||||||    
T  29891351 gtttcaggcatgtaacatgtctcggaaattaggttagtgt 29891390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5114843 - 5114704
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||| ||||||||||||||| ||||||||| | || ||    
T  5114843 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcatacaaaccaagaaaaaccctaatttctaagacat 5114744  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| | ||||| |||||||||||||||    
T  5114743 gtttcaggtatgtaacatatctcggaaattaggttagtgt 5114704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30250862 - 30250997
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||| ||||||||||||||||||||||||||        ||| |||||||||||||||||||| | |||||||||||  |||||||| | || ||    
T  30250862 tatgctcaatcatgaaataaacaatgaataaatcatgtgggtacaaggaatctactttgttcagcacatagaccaagaaaaactctaatttctaagacat 30250961  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggtta 128  Q
    |||||| ||||||||| |||||||||||||||||||    
T  30250962 gtttcaggtatgtaacatgtctcgaaaattaggtta 30250997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31574100 - 31573961
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||  ||||||||||||||||||| |||||||||||  | ||    
T  31574100 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttacgcacacaaaccaagaaaaaacctaatttccaaaacat 31574001  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  31574000 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 31573961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 25472225 - 25472322
Alignment:
Q  35 ataagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||||||||| | || |||||||| ||||||||| ||||| | |||||||||||||||    
T  25472225 ataaggaatctacttttttcagcacacaaaccaagaaaaaccctaatttctaagacatgtttcaggtatgtaacatgtcttggaaattaggttagtgt 25472322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 28636431 - 28636507
Alignment:
Q  56 gcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||||||  |||||||| | || |||||||| ||||||||| ||||||| |||| ||||||||||    
T  28636431 gcacacaaaccaagaaaaactctaatttctaagacatgtttcaggtatgtaacatgtctcggaaatgaggttagtgt 28636507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32418328 - 32418467
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||||| ||||||||| | |||||    
T  32418328 tatgctcaaccatgaaataaacaatgaataaatcatgtgagtacaaggaatctactttgttcagcacacaaactaagaaaaaccctaatttctaagatat 32418427  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  32418428 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 32418467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11540013 - 11539874
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||| ||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | |  ||    
T  11540013 tatgctcaacaatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagtcat 11539914  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  11539913 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 11539874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 13399591 - 13399730
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata--------agaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||| ||||||||||||||||| |||||||||||         || |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  13399591 tatgcttaaccatgaaataaacaaggaataaatcatgtgggtacgaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 13399690  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  13399691 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 13399730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 20128112 - 20127973
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||||||||||||||||||||||||||||||||   ||||||| | || ||    
T  20128112 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaactataatttctaagacat 20128013  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  20128012 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 20127973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43160181 - 43160320
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  43160181 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 43160280  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  43160281 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 43160320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22445811 - 22445947
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat----aagaaatctactttgtt-cagcacacaaaccaagaaaaatcctaatttccacgatatgtt 95  Q
    |||||||||||||||||||||||| |||||||||||    |||||||||||||| || ||||||| ||||||||||||| | ||||||| | || |||||    
T  22445811 tatgctcaaccatgaaataaacaaggaataaatcatgtacaagaaatctactttttttcagcacataaaccaagaaaaaccataatttctaagacatgtt 22445910  T
Q  96 tcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||| ||||||||| ||||||| ||||||| |||||||    
T  22445911 tcaggtatgtaacatgtctcggaaattagattagtgt 22445947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6949827 - 6949688
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||| |||||||| || ||||||||| | || ||    
T  6949827 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacacaccaagaacaaccctaatttctaagacat 6949728  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  6949727 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 6949688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33920783 - 33920922
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||||         ||| |||||||||||||||| ||||||||||||||||| ||||||||| | || ||    
T  33920783 tatgctcaaccatgaaataaacaaggaataaatcacgtgggtacaaggaatctactttgttcagtacacaaaccaagaaaaaccctaatttctaagacat 33920882  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| |||| |||| ||||||| |||||||||||||||    
T  33920883 gtttcaggtatataacatgtctcggaaattaggttagtgt 33920922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43216084 - 43215945
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||  ||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  43216084 tatgctcaaccatgaaataaacaagaaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 43215985  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| |||| |||| ||||||| |||||| ||||||||    
T  43215984 gtttcaggtatttaacatgtctcggaaattaagttagtgt 43215945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4809050 - 4809189
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||| ||||||||| |||||||||||||||||| ||||||||  | || ||    
T  4809050 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctgctttgttcaacacacaaaccaagaaaaaccctaatttttaagacat 4809149  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| |||||||  ||||||||||||||    
T  4809150 gtttcaggtatgtaacatgtctcgggaattaggttagtgt 4809189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15550845 - 15550984
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||| |||||||||| |||||| |||||||        ||| | ||||||||||||||||||| ||||||||||||  |||||||| | || ||    
T  15550845 tatgctcaactatgaaataaataatgaacaaatcatgtgggtacaaggagtctactttgttcagcacacgaaccaagaaaaacactaatttctaagacat 15550944  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  15550945 gtttcaggtatgtaacatgtctcgaaaattaggttagtgt 15550984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38008122 - 38008261
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||  ||| ||||||||||||||||| |||||||||||| ||||||||| | || ||    
T  38008122 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaagaatgtactttgttcagcacactaaccaagaaaaaccctaatttctaagacat 38008221  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  38008222 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 38008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4355926 - 4356067
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcc-taatttccacgata 91  Q
    |||| ||||||||||||||||||| |||||||||||        ||| |||||| |||||| |||||||||||||||||||| || ||||||| | || |    
T  4355926 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctaatttgtttagcacacaaaccaagaaaaacccctaatttctaagaca 4356025  T
Q  92 tgtttcatgtatgtaacgtgtctcgaaaattaggttagtgtt 133  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||    
T  4356026 tgtttcaggtatgtaacatgtctcggaaattaggttagtgtt 4356067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44220018 - 44219880
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||| |||||||||| |||||||||||        ||| ||||||||| ||||||||||||||||||||||||  |||||||| | || ||    
T  44220018 tatgctcaaccataaaataaacaaggaataaatcatgtgggtaaaaggaatctactt-gttcagcacacaaaccaagaaaaactctaatttctaagacat 44219920  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||  ||||||||||||||| |||||||    
T  44219919 gtttcaggtatgtaatatgtctcgaaaattagcttagtgt 44219880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16953309 - 16953174
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||    ||||||||| ||||||||| | || ||    
T  16953309 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtataaggaatctactttgttcagcacac----caagaaaaaccctaatttctaagacat 16953214  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||  |||||||| ||||||| |||||||||||||||    
T  16953213 gtttcagatatgtaacatgtctcggaaattaggttagtgt 16953174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5560925 - 5560820
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  5560925 tatgctcaaccatgaaataaacaaggaataaatcatgtaggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 5560826  T
Q  93 gtttca 98  Q
    ||||||    
T  5560825 gtttca 5560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 63333 - 63193
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||  ||||||||||        ||| ||||||||||||||| |||||||| ||||||||| ||||||||| | || ||    
T  63333 tatgctcaaccatgaaataaacaagaaataaatcatgtgggtacaaggaatctactttgttcatcacacaaa-caagaaaaaccctaatttctaagacat 63235  T
Q  93 gtttc-atgtatgtaacgtgtctcga-aaattaggttagtgt 132  Q
    ||||| | ||||||||  |||||| | |||||||||||||||    
T  63234 gtttcaaggtatgtaatatgtctcaagaaattaggttagtgt 63193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 649697 - 649777
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaa 73  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||||||||||||| |||||||||||||||||    
T  649697 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcaacacacaaaccaagaaaa 649777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 25335934 - 25335843
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||| |  | |||||||| ||||||||| | ||||  ||||||| |||||||    
T  25335934 aatctattttgttcagcacacaaaccaataaaaaccctaatttctaaaacatgtttcacgtatgtaacatatctcagaaattagattagtgt 25335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 42192617 - 42192476
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaat--cctaatttccacgat 90  Q
    |||||||||||||||||||||||| ||||| | |||        ||| |||||||||||||||||||||||  ||| |||||   ||||||||| | ||     
T  42192617 tatgctcaaccatgaaataaacaaggaatagagcatgtgggtacaaggaatctactttgttcagcacacaacacaaaaaaaaaaccctaatttctaagac 42192518  T
Q  91 atgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||| ||||||||  ||||||  |||||||||||||||    
T  42192517 atgtttcaggtatgtaatatgtctcagaaattaggttagtgt 42192476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 13315807 - 13315733
Alignment:
Q  58 acacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||||||||||| | ||||||| | || |||||||| ||||||||| ||  ||| |||||||||||||||    
T  13315807 acacaaaccaagaaaaaccataatttctaagacatgtttcaggtatgtaacatgcatcggaaattaggttagtgt 13315733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11539809 - 11539840
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  11539809 tatgctcaaccatgaaataaacaatgaataaa 11539840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16175724 - 16175689
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  16175724 tatgctcaaccatgaaataaacaaggaataaatcat 16175689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28143405 - 28143374
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  28143405 tatgctcaaccatgaaataaacaatgaataaa 28143374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 26026489 - 26026628
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  26026489 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtataaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 26026588  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  26026589 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 26026628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 27245375 - 27245514
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  27245375 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtataaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 27245474  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  27245475 gtttcaagtatgtaacatgtctcggaaattaggttagtgt 27245514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25637369 - 25637505
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga--------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||| | ||        |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  25637369 tatgctcaaccatgaaataaacaaggaataaatcacatgagtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 25637468  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttag 129  Q
    ||||||  |||||||||||||||| ||||||||||||    
T  25637469 gtttcagatatgtaacgtgtctcggaaattaggttag 25637505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5746014 - 5745875
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||| ||||||||||||||||| |||||||||||        ||| ||||||||||||||||||||||||||||||||||||| |||||| | || ||    
T  5746014 tatgcttaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaatccaaatttctaagacat 5745915  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||| ||||    
T  5745914 gtttcaggtatgtaacatgtctcggaaattaggtttgtgt 5745875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35161176 - 35161037
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata--------agaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||||||        || ||||||||||||||||||||||||| |||||||| ||||||||| | || ||    
T  35161176 tatgctcaaccatgaaataaacaaggaataaatcatatgggtacaaggaatctactttgttcagcacacaaactaagaaaaaccctaatttctaagacat 35161077  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||| ||||    
T  35161076 gtttcaggtatgtaacatgtctcggaaattaggttggtgt 35161037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7732659 - 7732798
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||| |        ||| ||||||||||||| | |||||||||||||||||| ||||||||| | || ||    
T  7732659 tatgctcaaccatgaaataaacaaggaataaatcttgtgggtacaaggaatctactttgtttaacacacaaaccaagaaaaaccctaatttctaagacat 7732758  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  7732759 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 7732798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26048322 - 26048183
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga--------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||||||| |         ||||||||||||| |||||||||||||||||||| ||||||||| | || ||    
T  26048322 tatgttcaaccatgaaataaacaaggaataaatcatatgggtacaaagaatctactttgtttagcacacaaaccaagaaaaaccctaatttctaagacat 26048223  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| || |||||| ||||||||||||||| |||||||    
T  26048222 gtttcaggtttgtaacatgtctcgaaaattagcttagtgt 26048183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48247762 - 48247901
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||| ||||||||||||||| |||||||||||        ||  |||||||||| |||||||||| |||||||||||| ||||||||| | || ||    
T  48247762 tatgctcatccatgaaataaacaaggaataaatcatgtgggtacaaagaatctacttttttcagcacactaaccaagaaaaaccctaatttctaagacat 48247861  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  48247862 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 48247901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 5334041 - 5334180
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||   || ||||| | ||||||| | |||||    
T  5334041 tatgctcaaccatgaaataaacaaggaataaatcatgtaggtacaaggaatctactttgttcagcacacaacaaaaaaaaaaccataatttctaagatat 5334140  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  |||||||||||||||    
T  5334141 gtttcaggtatgtaacatgtctcagaaattaggttagtgt 5334180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16081674 - 16081535
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||||||        ||  ||||||||||||||||||||||||||||||||||  || ||||| | || ||    
T  16081674 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaaagaatctactttgttcagcacacaaaccaagaaaaactcttatttctaagacat 16081575  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||| | |||||||||||||||    
T  16081574 gtttcaggtatgtaacatgtcttggaaattaggttagtgt 16081535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28687874 - 28687760
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga-------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatg 93  Q
    |||||||||||||||||||||||| |||||||||||  |        ||||||||||||||| |||||||||||||||||| ||||||||| | || |||    
T  28687874 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtatatgaatctactttgttcaacacacaaaccaagaaaaaccctaatttctaagacatg 28687775  T
Q  94 tttcatgtatgtaac 108  Q
    ||||| |||||||||    
T  28687774 tttcaggtatgtaac 28687760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 787157 - 787022
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||  ||||||||||||||| ||||||||||||| |||| ||||||||| | || ||    
T  787157 tatgctcaaccatgaaataaacaaggaataaatcatgcgggtacaaagaatctactttgttcaacacacaaaccaag-aaaaccctaatttctaagacat 787059  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttag 129  Q
    |||||| ||||||||| |||||   ||||||||||||    
T  787058 gtttcaggtatgtaacatgtcttagaaattaggttag 787022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 14311506 - 14311597
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||||||| |||| |||||||| ||||||||| | || |||||||| ||||||||| ||||||| ||||| |||| ||||    
T  14311506 aatctactttgttcagcacataaactaagaaaaaccctaatttctaagacatgtttcaggtatgtaacatgtctcggaaatttggttcgtgt 14311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 39387362 - 39387287
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcg 116  Q
    |||||| ||||||| ||||||||||||||||||||| |||||| || || |||||||| ||||||||| |||||||    
T  39387362 aatctagtttgttcggcacacaaaccaagaaaaatcataattttcaagacatgtttcaggtatgtaacatgtctcg 39387287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 11973777 - 11973662
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||||||         ||| ||| |||||||||||||||||||||||||||||  | ||||||| |  | ||    
T  11973777 tatgctcaaccatgaaataaacaaggaataaatcacgtgggtacaaggaatatactttgttcagcacacaaaccaagaaaacccataatttctaaaacat 11973678  T
Q  93 gtttcatgtatgtaac 108  Q
    |||||| |||||||||    
T  11973677 gtttcaggtatgtaac 11973662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4478075 - 4478039
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  4478075 tatgctcaaccatgaaataaacaaggaataaagcata 4478039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 14654566 - 14654427
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  14654566 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 14654467  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||| | |||||||||||||||    
T  14654466 gtttcaggtatgtaacatgtcttggaaattaggttagtgt 14654427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32730560 - 32730699
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  32730560 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 32730659  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| |||| |||| ||||||| |||||||||||||||    
T  32730660 gtttcaggtatataacatgtctcggaaattaggttagtgt 32730699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38535670 - 38535531
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||| ||        ||||||| ||||||||||||||||||| |||||||||||||||||||| | || ||    
T  38535670 tatgttcaaccatgaaataaacaaggaataaataatgtgggtacaagaaatttactttgttcagcacacaagccaagaaaaatcctaatttctaagacat 38535571  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  38535570 gtttcatgtatgtaacatgtctcggaaattaggttagtgt 38535531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 44676643 - 44676782
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||  |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  44676643 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaatgaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 44676742  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  44676743 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 44676782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 330211 - 330072
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||| ||||||||||||||||||||||        ||| ||||||||||||||| |||||||||||||||||| ||||||||| | || ||    
T  330211 tatgctcaaccataaaataaacaatgaataaatcatgtgggtacaaggaatctactttgttcaacacacaaaccaagaaaaaccctaatttctaagacat 330112  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| | ||||| |||||||||||||||    
T  330111 gtttcaggtatgtaacatatctcggaaattaggttagtgt 330072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 51828711 - 51828850
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||| |||||||||||||||||||||||||||||| ||||||||| | || ||    
T  51828711 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatatactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 51828810  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||| | ||||||||| ||||||| |||||||||||||||    
T  51828811 gttttaggtatgtaacatgtctcggaaattaggttagtgt 51828850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 16689528 - 16689619
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||||| ||||||| |||||||||||||||    
T  16689528 aatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacatgtttcaggtatgtaacatgtctcggaaattaggttagtgt 16689619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41998605 - 41998466
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||  ||||||| ||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  41998605 tatgctcaaccatgaaataaacaagtaataaattatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 41998506  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||| ||||||||    
T  41998505 gtttcaggtatgtaacatgtctcggaaattatgttagtgt 41998466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 49720542 - 49720681
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||| ||||||||||||||||| ||||||||  | || ||    
T  49720542 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagaacacaaaccaagaaaaaccctaatttttaagacat 49720641  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||| ||||| ||||||| |||||||||||||||    
T  49720642 gtttcaggtacgtaacatgtctcggaaattaggttagtgt 49720681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 51473026 - 51473165
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||| ||||||||||||||||||| |||||||| ||        ||| |||||||||||||||||| ||||||||||||||| ||||||||  | || ||    
T  51473026 tatgttcaaccatgaaataaacaaggaataaataatgtgggtacaaggaatctactttgttcagcatacaaaccaagaaaaaccctaatttttaagacat 51473125  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  51473126 gtttcaggtatgtaacatgtctcgaaaattaggttagtgt 51473165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 51828128 - 51828267
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||  ||||||||||||||||||| ||||||||| |  | ||    
T  51828128 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttacgcacacaaaccaagaaaaaccctaatttctaaaacat 51828227  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  51828228 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 51828267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 55389972 - 55389833
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||| |||||||||| |||||||||||        ||| |||||||||| ||||||||||||||||||||||| ||||||||| | || ||    
T  55389972 tatgctcaaccataaaataaacaaggaataaatcatgtgggtacaaggaatctacttttttcagcacacaaaccaagaaaaaccctaatttctaagacat 55389873  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
     ||||| ||||||||| | ||||| |||||||||||||||    
T  55389872 atttcaggtatgtaacatatctcggaaattaggttagtgt 55389833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 49951869 - 49951782
Alignment:
Q  45 tactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||||| |||||||||||||||||| ||||||||| | || |||||||| ||||||||| ||||||| |||||||||||||||    
T  49951869 tactttgttcaacacacaaaccaagaaaaaccctaatttctaagacatgtttcaagtatgtaacatgtctcggaaattaggttagtgt 49951782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 39010245 - 39010383
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||| |||| ||        ||| |||||| |||||| |||||||||||||||||||| ||||||||| | || ||    
T  39010245 tatgctcaaccatgaaataaacaaggaacaaataatgtgggtacaaggaatctaatttgtt-agcacacaaaccaagaaaaaccctaatttctaagacat 39010343  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  39010344 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 39010383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46013593 - 46013732
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||| || |||||||||||        ||  |||||| ||||||||||||||||| ||||||||| ||||||||  | || ||    
T  46013593 tatgctcaaccatgaaataaataaagaataaatcatgtgggtacaatgaatctattttgttcagcacacaaatcaagaaaaaccctaatttttaagacat 46013692  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  46013693 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 46013732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40275469 - 40275331
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||| |||        ||| ||||||||||||||||||||| ||| || |||||| |||||||| | || ||    
T  40275469 tatgctcaaccatgaaataaacaaggaataaagcatgtggatacaaggaatctactttgttcagcacac-aactaaaaaaaattctaatttctaagacat 40275371  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||  ||||||| |||||||    
T  40275370 gtttcaggtatgtaacatgtctcagaaattagattagtgt 40275331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 43678655 - 43678558
Alignment:
Q  5 ctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgt 94  Q
    |||||||||| ||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  43678655 ctcaaccatggaataaacaaggaataaatcatgtgggtataaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagatatgt 43678558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 40838871 - 40838962
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||||| |||| |||| ||||| | ||||||| | || |||||||| ||||||||| ||||||  |||||||||||||||    
T  40838871 aatctactttgttcagcaaacaacccaaaaaaaaccttaatttctaagacatgtttcaggtatgtaacatgtctcagaaattaggttagtgt 40838962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 52375706 - 52375563
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaacc----aagaaaaatcctaatttccacg 88  Q
    ||||||||||||||||||||| || ||||||| |||        ||| ||||||||||||||||||||||| ||    || ||||| ||||||||| | |    
T  52375706 tatgctcaaccatgaaataaataaggaataaagcatgtgggtacaaggaatctactttgttcagcacacaacccgaaaaaaaaaaaccctaatttctaag 52375607  T
Q  89 atatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    | |||||||| ||||||||| ||||||  |||||||||||||||    
T  52375606 acatgtttcaggtatgtaacatgtctcagaaattaggttagtgt 52375563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 34105023 - 34104902
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| ||||||| |||        ||| |||||||||||||| |||||| |||||||||||| |||||||||   || ||    
T  34105023 tatgctcaaccatgaaataaacaaagaataaaacatgtgggtacaaggaatctactttgttcggcacactaaccaagaaaaaccctaatttcttagacat 34104924  T
Q  93 gtttcatgtatgtaacgtgtct 114  Q
    ||||||||  |||||| |||||    
T  34104923 gtttcatgcttgtaacatgtct 34104902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 34104808 - 34104899
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttc 84  Q
    |||||||||||||||||||||||| ||||||| |||        ||| |||||||||||||| |||||| |||||||||||| |||||||||    
T  34104808 tatgctcaaccatgaaataaacaaagaataaaacatgtgggtacaaggaatctactttgttcggcacactaaccaagaaaaaccctaatttc 34104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25535062 - 25535097
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  25535062 tatgctcaaccatgaaataaacaaggaataaatcat 25535097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27200067 - 27200032
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  27200067 tatgctcaaccatgaaataaacaaggaataaatcat 27200032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37727100 - 37727131
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  37727100 tatgctcaaccatgaaataaacaatgaataaa 37727131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17464865 - 17464831
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17464865 tatgctcaaccatgaaataaacaaggaataaatca 17464831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 43222716 - 43222628
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagt 130  Q
    |||||||||| |||||||||| ||| || ||||| | ||||||| | || |||||||| ||||||||| |||||   |||||||||||||    
T  43222716 aatctactttattcagcacactaacaaaaaaaaaac-taatttctaagacatgtttcaagtatgtaacatgtcttagaaattaggttagt 43222628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30786943 - 30787082
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  30786943 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 30787042  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||  |||||||| ||||||| |||||||||||||||    
T  30787043 gtttcagatatgtaacatgtctcggaaattaggttagtgt 30787082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34555552 - 34555691
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||| ||||||||||||||||| |||||||||||        ||| ||||||||||||||||||||||||| |||||||||||||||||| | || ||    
T  34555552 tatgcttaaccatgaaataaacaaggaataaatcatgtggatacaaggaatctactttgttcagcacacaaactaagaaaaatcctaatttctaagacat 34555651  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  34555652 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 34555691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9992530 - 9992391
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||||||||||||||| || ||||||||||||||| ||||||||| | || ||    
T  9992530 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcaacaaacaaaccaagaaaaaccctaatttctaagacat 9992431  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| |||||| ||||||||||||||||    
T  9992430 gtttcaggtatgtaacatgtctcaaaaattaggttagtgt 9992391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10278720 - 10278859
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata--------agaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||| ||||||||| ||| ||||||||||||        || |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  10278720 tatgctcaactatgaaataagcaaggaataaatcatatgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 10278819  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  10278820 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 10278859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16298853 - 16298992
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| | ||||||| | || ||    
T  16298853 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccataatttctaagacat 16298952  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| | ||||||  ||||||| |||||||||||||||    
T  16298953 gtttcaggcatgtaaaatgtctcggaaattaggttagtgt 16298992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 37505443 - 37505304
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||  ||||||||| | ||  |    
T  37505443 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaatccctaatttctaagacgt 37505344  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||| ||||| ||||||| |||||||||||||||    
T  37505343 gtttcaggtacgtaacatgtctcggaaattaggttagtgt 37505304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 50304953 - 50305092
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga--------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||  ||        |||||||||||||||| |||||||||||||| || ||||||||| | || ||    
T  50304953 tatgctcaaccatgaaataaacaaggaataaatcatgtgagtacaaagaatctactttgttcagtacacaaaccaagaataaccctaatttctaagacat 50305052  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  50305053 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 50305092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 1744502 - 1744633
Alignment:
Q  5 ctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgttt 96  Q
    ||||||||| |||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||||||    
T  1744502 ctcaaccataaaataaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacatgttt 1744601  T
Q  97 catgtatgtaacgtgtctcgaaaattaggtta 128  Q
    || ||||||| | ||||||| |||||||||||    
T  1744602 caggtatgtagcatgtctcggaaattaggtta 1744633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29439102 - 29439241
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcataaga--------aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||| |         ||||||||||||||| |||||||||||||||| | | ||||||| | || ||    
T  29439102 tatgctcaaccatgaaataaacaaggaataaatcatatgggtacaaagaatctactttgttcatcacacaaaccaagaaataccataatttctaagacat 29439201  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  29439202 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 29439241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 44582228 - 44582365
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||| ||||| |||||||||||        ||| |||||||||||||||||||||| |||||||||||  |||||||| | || ||    
T  44582228 tatgctcaaccatgaaatgaacaaggaataaatcatgtgggtacaaggaatctactttgttcagcacacagaccaagaaaaactctaatttctaagacat 44582327  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagt 130  Q
    |||||| ||||||||| ||||||| |||||| ||||||    
T  44582328 gtttcaggtatgtaacatgtctcggaaattatgttagt 44582365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4080192 - 4080332
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatc-ctaatttccacgata 91  Q
    |||| ||||||||||||||||||| |||||||||||        ||| ||| |||||||||||||||||||||||||||||| | |||||||| | || |    
T  4080192 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatttactttgttcagcacacaaaccaagaaaaaactctaatttctaagaca 4080291  T
Q  92 tgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||| ||||||||| ||||||  |||||||||||||||    
T  4080292 tgtttcaggtatgtaacatgtctcagaaattaggttagtgt 4080332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44954601 - 44954462
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||| |||||||| |||||||||         ||| |||||| ||||||||||||| ||||||||||||| ||||||||| | || ||    
T  44954601 tatgctcaaccatgaagtaaacaataaataaatcacgtgggtacaaggaatctattttgttcagcacataaaccaagaaaaaccctaatttctaagacat 44954502  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||  ||||| ||||||| |||||||||||||||    
T  44954501 gtttcaggtgcgtaacatgtctcggaaattaggttagtgt 44954462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 17641695 - 17641601
Alignment:
Q  37 aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| | | || ||||||||  |||||||| ||||||  |||||||||||||||    
T  17641695 aagaaatctactttgttcatcacacaaaccaagaaaaa-cctaattgctaagacatgtttcagatatgtaacatgtctcagaaattaggttagtgt 17641601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 443926 - 443787
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||  ||||||||||||| |||||||||||        ||| ||||||||||||||| ||||||||| |||||||| ||||||||  | || ||    
T  443926 tatgctcaattatgaaataaacaaagaataaatcatgtgggtacaaggaatctactttgttcaacacacaaactaagaaaaaccctaatttttaagacat 443827  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||  ||| |||||||||| | ||||||    
T  443826 gtttcaggtatgtaatatgtttcgaaaattaaggtagtgt 443787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 21938868 - 21938799
Alignment:
Q  63 aaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||| ||||||||| | || |||||||| ||||||||| ||||||| |||||||||||||||    
T  21938868 aaccaagaaaaaccctaatttctaagacatgtttcaggtatgtaacatgtctcggaaattaggttagtgt 21938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 1837725 - 1837815
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||| | || |||||||| |||| |||| | | ||| |||||||||||||||    
T  1837725 aatctactttgttcatcacacaaaccaag-aaaaccctaatttctaagacatgtttcaggtatctaacatatttcggaaattaggttagtgt 1837815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23340354 - 23340434
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaa 73  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||||||||||| ||||||||||||||||    
T  23340354 tatgctcaaccatgaaataaacaaagaataaatcatgtggatacaaggaatctactttgttcagaacacaaaccaagaaaa 23340434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29869791 - 29869827
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29869791 tatgctcaaccatgaaataaacaaggaataaatcata 29869827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37421333 - 37421368
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37421333 tatgctcaaccatgaaataaacaaggaataaatcat 37421368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 45048325 - 45048356
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  45048325 tatgctcaaccatgaaataaacaatgaataaa 45048356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 52335885 - 52335850
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  52335885 tatgctcaaccatgaaataaacaaggaataaatcat 52335850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 34011601 - 34011560
Alignment:
Q  91 atgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||| ||||||||| ||||||| |||||||||||||||    
T  34011601 atgtttcaggtatgtaacatgtctcggaaattaggttagtgt 34011560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46438 - 46577
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| ||| ||||||||| |||||||||||||||||||| ||||||||| |  | ||    
T  46438 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaggaatttactttgtttagcacacaaaccaagaaaaaccctaatttctaatacat 46537  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| ||||||||| ||||||| |||||||||||||||    
T  46538 gtttcaggtatgtaacatgtctcggaaattaggttagtgt 46577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18150098 - 18149959
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||| |||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||    
T  18150098 tatgctcaaccataaaataaacaaggaataaatcatgtgggtataaggaatctactttgttcagcacacaaaccaagaaaaaccctaatttctaagacat 18149999  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||  ||||||| | ||||||| |||||||||||||||    
T  18149998 gtttcgggtatgtagcatgtctcggaaattaggttagtgt 18149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21371071 - 21370932
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||  |||||||||| |||||||||||||||||||||||| |||||||| | || ||    
T  21371071 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtacaaagaatctactttattcagcacacaaaccaagaaaaattctaatttctaagacat 21370972  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||| |||| |||| ||||||| |||||| ||||||||    
T  21370971 gtttcaggtatataacatgtctcggaaattatgttagtgt 21370932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38900813 - 38900952
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    |||||||||||||||||||||||| |||||||||||        ||| |||||||| |||||| |||||||||||||||||| ||||||||| | || ||    
T  38900813 tatgctcaaccatgaaataaacaaggaataaatcatgtgggtataaggaatctactctgttcatcacacaaaccaagaaaaaccctaatttctaagacat 38900912  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    | |||| ||||||||| ||||||  |||||||||||||||    
T  38900913 gcttcaggtatgtaacatgtctcagaaattaggttagtgt 38900952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14340782 - 14340678
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat-------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatg 93  Q
    |||||||||||||||||||||||| |||||||||||       ||| |||||||||||||||||||||||||||||||||| | ||||||| | || |||    
T  14340782 tatgctcaaccatgaaataaacaaggaataaatcatgtggtagaaggaatctactttgttcagcacacaaaccaagaaaaaccataatttctaagacatg 14340683  T
Q  94 tttca 98  Q
    |||||    
T  14340682 tttca 14340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5161953 - 5161819
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||| || |||||||||||        ||| |||||||||| |||||||||||| |||||||||||| ||||||| | || ||    
T  5161953 tatgctcaaccatgaaataaataaggaataaatcatgtgggtacaaggaatctactttcttcagcacacaa-ccaagaaaaatcataatttctaagacat 5161855  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||||    |||||||| ||||||| |||||||||||||||    
T  5161854 gttt----tatgtaacatgtctcggaaattaggttagtgt 5161819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28289855 - 28289948
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttcca 86  Q
    |||| ||||||||||||||||||| |||||||||||        ||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  28289855 tatgttcaaccatgaaataaacaaggaataaatcatgtgggtacaaagaatctactttgttcagcacacaaaccaagaaaaaccctaatttcca 28289948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 8418856 - 8418931
Alignment:
Q  57 cacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||||||||||| ||||||||| | || || ||||| ||||||||| ||||||| |||||||||||||||    
T  8418856 cacacaaaccaagaaaaaccctaatttctaagacatatttcaggtatgtaacatgtctcgcaaattaggttagtgt 8418931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 15029533 - 15029620
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggtta 128  Q
    |||||||||||||||| |||||||| || ||||| | ||||||| | || |||||||| ||||||||| ||||||| |||||||||||    
T  15029533 aatctactttgttcagtacacaaactaaaaaaaaccataatttctaagacatgtttcaggtatgtaacatgtctcggaaattaggtta 15029620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 22651720 - 22651599
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||| || ||||||| |||        |||||||||||||| |||||||||| ||| || ||||| || |||||| | || ||    
T  22651720 tatgctcaaccatgaaataaataaggaataaagcatgtgagtacaagaaatctactttattcagcacactaacaaaaaaaaacccaaatttctaagacat 22651621  T
Q  93 gtttcatgtatgtaacgtgtct 114  Q
    |||||||||||||||| |||||    
T  22651620 gtttcatgtatgtaacatgtct 22651599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 19291668 - 19291592
Alignment:
Q  56 gcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    |||||||||  || |||||  |||||||| | || |||||||| ||||||||| | ||||| |||||||||||||||    
T  19291668 gcacacaaataaaaaaaaactctaatttctaagacatgtttcaggtatgtaacatatctcggaaattaggttagtgt 19291592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6766 - 6628
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||| ||||||||||        ||| ||||||||||||||| |||| |||||||| |||| |||||||||   || ||    
T  6766 tatgctcaaccatgaaataaacaattaataaatcatgtgggtacaagcaatctactttgttcaacacagaaaccaag-aaaaccctaatttctcagacat 6668  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||| || ||||||||| ||||||  |||||||||||||||    
T  6667 gttgcaggtatgtaacatgtctcagaaattaggttagtgt 6628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6784 - 6646
Alignment:
Q  1 tatgctcaaccatgaaataaacaatgaataaatcat--------aagaaatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatat 92  Q
    ||||||||||||||||||||||||| ||||||||||        ||| ||||||||||||||| |||| |||||||| |||| |||||||||   || ||    
T  6784 tatgctcaaccatgaaataaacaattaataaatcatgtgggtacaagcaatctactttgttcaacacagaaaccaag-aaaaccctaatttctcagacat 6686  T
Q  93 gtttcatgtatgtaacgtgtctcgaaaattaggttagtgt 132  Q
    ||| || ||||||||| ||||||  |||||||||||||||    
T  6685 gttgcaggtatgtaacatgtctcagaaattaggttagtgt 6646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 84419 - 84493
Alignment:
Q  41 aatctactttgttcagcacacaaaccaagaaaaatcctaatttccacgatatgtttcatgtatgtaacgtgtctc 115  Q
    ||||||||||||||||||||||||||||||||||  |||||||| | || |||||||| ||||||||| ||||||    
T  84419 aatctactttgttcagcacacaaaccaagaaaaactctaatttctaagacatgtttcaggtatgtaacatgtctc 84493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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