View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_16 (Length: 409)
Name: NF18033_low_16
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 14486091 - 14486463
Alignment:
| Q |
19 |
atgagttttccacaatttttctaaaatgcattaatgccatttaatattgattgagtggagtaaattagtactgttgtaaggagtatccatgttaattcta |
118 |
Q |
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| T |
14486091 |
atgagttttccacaatttttctaaaatgcattaatgccatttaatattgattgagtggagtaaatgagtactgttgtaaggagtatccatgttaattcca |
14486190 |
T |
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| Q |
119 |
cacttataattgctttactggttgttaactcgtgaaactgctgacaatatttgacttccttgcatgtactaataattattggttatactcgtgaaactgc |
218 |
Q |
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| T |
14486191 |
catttataattgctttactggttgttaactcgtgaaactgctgacaatatttggcttccttgcatgtactaataattattggttatactcgtgaaactgc |
14486290 |
T |
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| Q |
219 |
attttgaatttgaaaatttgtgattttaggtcattctatttaataggagagtgactgctttcactgtcctttctattatttccgtgaatgcaacaagcat |
318 |
Q |
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| T |
14486291 |
attttgaatttgaaaatttgtgtttttaggtcattctatttaataggagagtgactgctttcgttgtcctttctattatttccgtgaatgcaacaagcat |
14486390 |
T |
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| Q |
319 |
gtttttgcataaaacgtggaattatagtgttgataaatttatctattttgtgttggcactaataatgatttgt |
391 |
Q |
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| T |
14486391 |
gtttttgcataaaacgtggaattatagtgttgataaatttatctattttgtgttggcactaataatgatttgt |
14486463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 14497310 - 14497462
Alignment:
| Q |
96 |
aaggagtatccatgttaattctacacttat--aattgctttactggttgttaactcgtgaaactgctg-------acaatatttgacttccttgcatgta |
186 |
Q |
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| T |
14497310 |
aaggagtatccatgttaataccacacttatgaaattgctttgctggttgttaactcgtgaacctactttgtgataacaatatttgacttccttacatgta |
14497409 |
T |
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| Q |
187 |
ctaataattattggttatactcgtgaaactgcattttgaatttgaaaatttgtg |
240 |
Q |
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| T |
14497410 |
ctaataattattggttacactcgtgaaactgca-tttgaatttgaaaatttgtg |
14497462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 14480074 - 14480258
Alignment:
| Q |
16 |
atgatgagttttccacaat-ttttctaaaatgcattaatgccatttaatattgattgagtggagtaaattagtactgttgtaaggagtatccatgttaat |
114 |
Q |
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| T |
14480074 |
atgatgagttttccacaaacttttttcaaatgcattaatgccatttaatattgattgagtggagtca--------tgatg--ag--ttttccatgttaat |
14480161 |
T |
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| Q |
115 |
tctacactta--taattgctttactggttgttaactcgtgaaactgc-------tgacaatatttgacttccttgcatgtactaataattattggtt |
202 |
Q |
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| T |
14480162 |
tccacacttaagaaattgctttgctggttgttaactcgtgaaactgctttgtgatgacaatatttgacttccttgcatgtactaataatgattggtt |
14480258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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