View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_17 (Length: 397)
Name: NF18033_low_17
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 32272863 - 32272485
Alignment:
| Q |
1 |
taatttgagatccattgatttactaatctttacggttgatcttcaatcggacaactaagatcaataactatgtcacacattctcaacaatacatgactaa |
100 |
Q |
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| T |
32272863 |
taatttgagatcgattgatttaccaatcttcacggttgattttcaatcggacaactaagatcaataactatgtcacacattctcaacaatacatgactaa |
32272764 |
T |
|
| Q |
101 |
ttttcttattttgacatgaatgattgaaactgcaggcacaacaattattccaatacattccggagaaacaaacctcgtcagagtgatcaatgcagcactc |
200 |
Q |
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| T |
32272763 |
ttttcttattttgacatgaatgattgaaactgcaggcacaacaattattccaatacattccggagaaacaaacctcgtcagagtgatcaatgcggcactc |
32272664 |
T |
|
| Q |
201 |
aaccaaccacttttcttcacaattgccaaccacaaactaaccgtggttggcgcagatgcctcttacgttaaacccttcaccaccaacatcctcatgttag |
300 |
Q |
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| T |
32272663 |
aaccaaccacttttcttcacaattgccaaccacaaactaaccgtggttggcgcagatgcctcttacgttaaacccttcaccaccaacatcctcatgttag |
32272564 |
T |
|
| Q |
301 |
gacccggccaaaccaccgatgtcttaatacacgcaaaccaaccaccttccaaatactacatagctgcacgcgcctatca |
379 |
Q |
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| T |
32272563 |
gacccggccaaaccaccgatgtcttaatacacgcaaaccaaccaccttccaaatactacatagctgcacgcgcctatca |
32272485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 131 - 322
Target Start/End: Complemental strand, 35991961 - 35991770
Alignment:
| Q |
131 |
tgcaggcacaacaattattccaatacattccggagaaacaaacctcgtcagagtgatcaatgcagcactcaaccaaccacttttcttcacaattgccaac |
230 |
Q |
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|||||||||||||||| |||||||| |||| ||||||||||||||| | ||||| ||||||||||| | |||||||| ||||||||||||||||| ||| |
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| T |
35991961 |
tgcaggcacaacaattgttccaatagattcaggagaaacaaacctcataagagtaatcaatgcagccttaaaccaacctcttttcttcacaattgcaaac |
35991862 |
T |
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| Q |
231 |
cacaaactaaccgtggttggcgcagatgcctcttacgttaaacccttcaccaccaacatcctcatgttaggacccggccaaaccaccgatgt |
322 |
Q |
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|| |||||||| || || || || ||||| || || || ||||| ||||| ||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
35991861 |
cataaactaacagtagtaggtgctgatgcttcctatgtcaaaccattcacaaccaatgtcctcatgttaggacctggccaaaccactgatgt |
35991770 |
T |
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