View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18033_low_18 (Length: 371)
Name: NF18033_low_18
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 21614907 - 21615094
Alignment:
| Q |
167 |
gtgttggaaatggagacagtttaccttatttatcacgaagtttatcggcatctgctagtgtttatccttctgattataaagatcatagctttgtatctgg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21614907 |
gtgttggaaatggagacagtttaccttatttatcacgaagtttatcagcatctgctagtgtttatccttctgattataaagatcatagctttgtatctgg |
21615006 |
T |
|
| Q |
267 |
gccattgaaaagtcaggtgtctgtgtctgagtccgtggttcatagaaaaagtttgaaaattgatgtttatccttatgatcatcaaaaa |
354 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21615007 |
gccgttgaaaagtcaggtgtctgtgtctgagtccgtggttcatagaaaaagtttgaaaattgatgtttatccatatgatcatcaaaaa |
21615094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 21614756 - 21614844
Alignment:
| Q |
16 |
atcagtgagcttgaacacaagattgtgtggcagaaacaagaggtaaagaatttgaaagaaaaatctttgtggaataaaggttttgataa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21614756 |
atcagtgagcttgaacacaagattgtgtggcagaaacaagaggtaaagaatttgaaagaaaaatctttgtggaataaaggttttgataa |
21614844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 21615104 - 21615177
Alignment:
| Q |
256 |
tttgtatctgggccattgaaaagtcaggtgtctgtgtctgagtccgtggttcatagaaaaagtttgaaaattga |
329 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||| |
|
|
| T |
21615104 |
tttgtatcagggccgttgaaaagtcaggtgtctgtgtctgagtctgtgctgaatagaaaatgtttgaaacttga |
21615177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University