View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_19 (Length: 369)
Name: NF18033_low_19
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 26143201 - 26142965
Alignment:
| Q |
18 |
aagtagtccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaactcccaagccaagttaataattgta |
117 |
Q |
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| T |
26143201 |
aagtagtccacctaaattggcatcggggagcatcgaacttgagaccatgtggaagagcacactccaaggtcctaactcccaagccaagttaataattgta |
26143102 |
T |
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| Q |
118 |
attgaattcttgccactaaaaatttaattgcatctttgaagtttaaaatttataaaagagacttaatagcttaaaataatttaattgcaaattacagatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
26143101 |
attgaattcttgccactaaaaatttaattgcatctttgaagtttaaaatttataaaagagacttaatagcttaaaagaatttaattgcaaattacagttt |
26143002 |
T |
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| Q |
218 |
tttaatttaaagacaaattatagacaagctcaaaagt |
254 |
Q |
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| T |
26143001 |
tttaatttaaagacaaattatagacaagctcaaaagt |
26142965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 26142621 - 26142515
Alignment:
| Q |
255 |
gtcattagcgttaacttagagtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctctaattttacaag |
354 |
Q |
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| T |
26142621 |
gtcattagcgttaacttacagtgtccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctctaattttacaaa |
26142522 |
T |
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| Q |
355 |
tataatt |
361 |
Q |
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||||||| |
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| T |
26142521 |
tataatt |
26142515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 31492299 - 31492458
Alignment:
| Q |
18 |
aagtagtccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaactcccaagccaagttaataattgta |
117 |
Q |
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| T |
31492299 |
aagtagtccacctaaattaacatcatgaaagatcgaacttgagaccatgaggaagagcacattccaaggtcccaactcccaagccaggttaat------- |
31492391 |
T |
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| Q |
118 |
attgaattcttgccactaaaaatttaattgcatctttgaagtttaaaatttataaaagagacttaatag |
186 |
Q |
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|||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |
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| T |
31492392 |
--tgaattattgcagctaaaaatttaattgcatcgttggagtttaaaatttataaaagagactcaatag |
31492458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 31490840 - 31490743
Alignment:
| Q |
264 |
gttaacttagagtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctc--taattttacaagtataa |
359 |
Q |
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| T |
31490840 |
gttaacttatagtgtccttagctcggtattgccattgcgccctaaagaacaattctccatcaactgacttgaacatctctataattttacaaatataa |
31490743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 31490730 - 31490643
Alignment:
| Q |
274 |
agtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctc--taattttacaagtataa |
359 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
31490730 |
agtgtccttagctcggtaatagcattgcgccctaaagaacaattctccatcaactgattcgaacatctctataattttacaaatataa |
31490643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 31490911 - 31490848
Alignment:
| Q |
68 |
ggaagagcacactccatggtcccaactcccaagccaagttaataattgtaattgaattcttgcc |
131 |
Q |
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| T |
31490911 |
ggaagagcacagtctaaggtcccaactcccaaaccaagttaataattgtaattgaattcttgcc |
31490848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 32992714 - 32992643
Alignment:
| Q |
21 |
tagtccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaa |
92 |
Q |
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|||||||| |||||| || ||||||| |||||||||||||| || ||| |||||||||||| |||||||| |
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| T |
32992714 |
tagtccactcaaattgacaccggggagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaa |
32992643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 952609 - 952542
Alignment:
| Q |
25 |
ccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaa |
92 |
Q |
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| T |
952609 |
ccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaa |
952542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 31605826 - 31605893
Alignment:
| Q |
25 |
ccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaa |
92 |
Q |
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||||| ||||||||| ||||||| |||||||||||||| || ||| ||||||||| || |||||||| |
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| T |
31605826 |
ccacccaaattggcaccggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaa |
31605893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 22760955 - 22760894
Alignment:
| Q |
31 |
aaattggcatcggggagcatcgaacttgagactatggggaagagcacactccatggtcccaa |
92 |
Q |
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||||||||||||||||| ||||||| |||||| || ||| ||||||||||| |||||||| |
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| T |
22760955 |
aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaa |
22760894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 11612401 - 11612340
Alignment:
| Q |
21 |
tagtccacctaaattggcatcggggagcatcgaacttgagactatggggaagagcacactcc |
82 |
Q |
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||||| ||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||| |
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| T |
11612401 |
tagtcgacctaaattggcaccggggagcatcgaacctgagaccttaaggaggagcacactcc |
11612340 |
T |
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