View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18033_low_20 (Length: 368)

Name: NF18033_low_20
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18033_low_20
NF18033_low_20
[»] chr4 (4 HSPs)
chr4 (1-352)||(24262144-24262495)
chr4 (19-352)||(38465907-38466241)
chr4 (115-338)||(5453915-5454138)
chr4 (144-195)||(28023765-28023816)
[»] chr7 (8 HSPs)
chr7 (73-338)||(14231637-14231903)
chr7 (18-334)||(26906867-26907184)
chr7 (73-338)||(1264361-1264627)
chr7 (73-338)||(48847311-48847577)
chr7 (176-313)||(21680606-21680743)
chr7 (73-337)||(34576982-34577247)
chr7 (144-194)||(43907944-43907994)
chr7 (159-259)||(11003138-11003238)
[»] chr1 (1 HSPs)
chr1 (73-334)||(25226407-25226669)
[»] chr6 (6 HSPs)
chr6 (73-338)||(21999460-21999726)
chr6 (73-338)||(31891578-31891844)
chr6 (219-352)||(25169438-25169571)
chr6 (91-337)||(4095773-4096021)
chr6 (219-337)||(2736564-2736682)
chr6 (159-196)||(2267671-2267708)
[»] chr5 (2 HSPs)
chr5 (73-338)||(30442992-30443257)
chr5 (115-327)||(43026706-43026918)
[»] chr3 (14 HSPs)
chr3 (73-338)||(37984510-37984776)
chr3 (73-338)||(53024989-53025255)
chr3 (88-338)||(31687310-31687561)
chr3 (73-338)||(24759084-24759350)
chr3 (73-338)||(24826664-24826930)
chr3 (73-338)||(33648443-33648709)
chr3 (73-338)||(17689099-17689360)
chr3 (115-338)||(44703202-44703425)
chr3 (73-337)||(20370855-20371120)
chr3 (115-196)||(925427-925508)
chr3 (88-184)||(53545111-53545208)
chr3 (276-338)||(43731575-43731637)
chr3 (159-196)||(36155298-36155335)
chr3 (225-337)||(38656116-38656228)
[»] chr8 (7 HSPs)
chr8 (73-338)||(8163563-8163828)
chr8 (88-352)||(35350974-35351239)
chr8 (262-338)||(35615138-35615214)
chr8 (225-308)||(33686394-33686477)
chr8 (276-338)||(5337782-5337844)
chr8 (159-196)||(18207912-18207949)
chr8 (159-195)||(16804564-16804600)
[»] chr2 (5 HSPs)
chr2 (272-352)||(30045165-30045245)
chr2 (272-352)||(30050328-30050408)
chr2 (272-352)||(30141372-30141452)
chr2 (272-352)||(30242959-30243040)
chr2 (225-337)||(1512567-1512679)
[»] scaffold0007 (1 HSPs)
scaffold0007 (300-349)||(79394-79443)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 24262144 - 24262495
Alignment:
Q  1 tagaagaaagtgaggcgagatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaag 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  24262144 tagaagaaagtgaggccagatgatgtacacacaccaaaatttctaaacattattaatttaactagtttttcgaatcacaagataacattgaaagttggag 24262243  T
Q  101 ttcctgttatgttttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagg 200  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24262244 ttcctgttatgttttgagaaatttggacataacagcaggtttgtgtaatggtacttgattgataattacaaagatggggatatatgtttttgaagggagg 24262343  T
Q  201 gttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaat 300  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24262344 gttatactaggaagcgggattggggagaaggtatatataccaaggttgtcgctgacaccgtctgatacgagaattcctttcaaatttcagcgcagacaat 24262443  T
Q  301 ttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24262444 ttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 24262495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 38466241 - 38465907
Alignment:
Q  19 gatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaagttcctgttatgtt-ttga 117  Q
    |||||||||||||||||| ||||| | |||  ||||||||   |  ||||| | |||||||| |||   |||||||||| ||||||| ||||||| ||||    
T  38466241 gatgatgtacacacaccagaattttttaactctattaattcttccggtcttccaaatcacaaaatatgtttgaaagttggagttcctattatgttgttga 38466142  T
Q  118 gaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaagcgg 217  Q
    |||||||||| |  |||||||   | |||||||| ||||| || ||  ||||||||||||| | |||| || |||||||  |||||||| |  | |||      
T  38466141 gaaatttggatattacagcagacatttgtaatggaactcggttaattcttacaaagatgggaatatatattcttgaaggcggggttatatctggtagcaa 38466042  T
Q  218 gattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgt 317  Q
     |||| ||||||||||||||||||||| || || ||||| ||| ||||||| ||||||| ||||||||||||||| |  || ||||||||| |||| |||    
T  38466041 tattgaggagaaggtatatataccaagattatcgctgacgccgtctgatacaagaattcttttcaaatttcagcgtaagcagtttcctatatttgtatgt 38465942  T
Q  318 tttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    ||||||||||| ||| ||||| |  ||||||||||    
T  38465941 tttgcaatgaccatacacaaaagccaagggcaatc 38465907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 338
Target Start/End: Original strand, 5453915 - 5454138
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaag 214  Q
    |||| ||||||||| ||||  |||| || |||||||| ||| ||||||| |||||||||||||| ||||||||  ||||||| |  |||||| || ||||    
T  5453915 tgaggaatttggacccaactacaggcctttgtaatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataacaggaag 5454014  T
Q  215 cgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtg 314  Q
    |   ||||| || ||||| | ||| || ||  | ||  ||  |||| ||||||| ||||||||||| |||||||| ||| |||| || ||||||  |||     
T  5454015 caatattggagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaatttcaacgccgacagttccctatatctgtt 5454114  T
Q  315 tgttttgcaatgactataaacaaa 338  Q
    |||||||||||||| || ||||||    
T  5454115 tgttttgcaatgaccatcaacaaa 5454138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 28023765 - 28023816
Alignment:
Q  144 tgtaatggtactcgattgataattacaaagatggggagatatgtttttgaag 195  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||    
T  28023765 tgtaatggtattcggttgataattacaaagttgggtagatatgttcttgaag 28023816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 14231637 - 14231903
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| |||| || |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  14231637 aatcacaagattactttgaaagttggagttcctattatattgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 14231736  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  14231737 agatgggaagatatgttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccag 14231836  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||    
T  14231837 aattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaa 14231903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 26907184 - 26906867
Alignment:
Q  18 agatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaagttcctgttatgtt-ttg 116  Q
    ||||||| | ||||||||| ||||  | |||| ||| |||| | | |||||| | ||||||||||| |  |||||||||| ||||||| ||||| | ||     
T  26907184 agatgatattcacacaccagaattcttgaacactatcaattcatcaagtcttcctaatcacaagattattttgaaagttggagttcctattatgctgttt 26907085  T
Q  117 agaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaagcg 216  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | ||| | || |||||||| ||||||||| |||||||||| |||||| || |||||     
T  26907084 agaaatttggacataacagcagggttgtgtaatggtactcgactaatagtcactaagatgggaagatatgttattgaagggagagttatatcaggaagca 26906985  T
Q  217 ggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtg 316  Q
       |||| |||||||| || ||||| || |||||| |||||||  ||||||| |||||||||||||||||||| |||||||| |||||||||| | ||||    
T  26906984 atgttggagagaaggtctacataccgagattgtcattgacaccatctgataccagaattcctttcaaatttcaacgcagacagtttcctatagctttgtg 26906885  T
Q  317 ttttgcaatgactataaa 334  Q
    ||||||||||||||||||    
T  26906884 ttttgcaatgactataaa 26906867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 1264361 - 1264627
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||  | || |    
T  1264361 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatggtcacta 1264460  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || ||| |    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  1264461 agatgggaagatatgttattgaagggagggtaatatcaggaaacaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccag 1264560  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||| | | |||||||||| | |||| |||||||||||||||||||||    
T  1264561 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaa 1264627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 48847577 - 48847311
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||  | || |    
T  48847577 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatggtcacta 48847478  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || ||| |    |||| |||||||| || ||||| || |||||| |||||||  ||||||| |     
T  48847477 agatgggaagatatgttattgaagggagggtaatatcaggaaacaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccat 48847378  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||| | | |||||||||| | |||| |||||||||||||||||||||    
T  48847377 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaa 48847311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 21680606 - 21680743
Alignment:
Q  176 ggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaatt 275  Q
    ||||||||||||| ||||||| | |||||||||||||||| |  ||||||| |||||||| ||| | ||  | ||| |||||||  | ||||| ||||||    
T  21680606 ggggagatatgttcttgaaggaaaggttataccaagaagcagcgttggggataaggtatacataactagactatcattgacaccttcagatactagaatt 21680705  T
Q  276 cctttcaaatttcagcgcagacaatttcctatagttgt 313  Q
    | ||| |||||| | |  ||||||||||||||||||||    
T  21680706 ctttttaaattttaacatagacaatttcctatagttgt 21680743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 337
Target Start/End: Original strand, 34576982 - 34577247
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    |||||||| ||||  || ||||||| ||| ||| ||||||| ||||||||| | |||  | ||| ||| || || ||||||||| | ||||||||||| |    
T  34576982 aatcacaaaataaagttaaaagttggagtacctattatgttgttgagaaatctagaccaatcagtaggactatgcaatggtactaggttgataattacca 34577081  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    | ||||| ||||||||| ||||||| | ||| ||| || | |||   ||||| || ||||||||||||||  ||||| ||||   |||| ||||||| ||    
T  34577082 aaatgggtagatatgttcttgaaggaaaggtgataacaggtagcaacattggtgacaaggtatatatacctcggttgacactagaaccgtctgatactag 34577181  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaa 337  Q
    ||| || |||||||| || || || || |||||||||  ||| | |||||||||||| || |||||    
T  34577182 aataccgttcaaattccaacgtaggcagtttcctatatctgtttattttgcaatgacaatcaacaa 34577247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 43907944 - 43907994
Alignment:
Q  144 tgtaatggtactcgattgataattacaaagatggggagatatgtttttgaa 194  Q
    |||||||||||||| ||||||||||||||| |||| |||||| || |||||    
T  43907944 tgtaatggtactcggttgataattacaaagttgggtagatatattcttgaa 43907994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 11003238 - 11003138
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacac 258  Q
    |||||||||||||||||||| | ||||||| ||||||| | ||| ||| || | |||   ||||| || ||||| |||||||||||| | ||||| ||||    
T  11003238 ttgataattacaaagatgggtatatatgttcttgaaggaaaggtgataacaggtagcaacattggagataaggtctatataccaaggctatcacttacac 11003139  T
Q  259 c 259  Q
    |    
T  11003138 c 11003138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 334
Target Start/End: Original strand, 25226407 - 25226669
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  25226407 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 25226506  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  25226507 agatgggaagatatgttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacatacctagattgtcattgacaccatctgataccag 25226606  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaa 334  Q
    |||||||||||||||||| || ||||| |||||||||| | ||||||||||||||||||||||    
T  25226607 aattcctttcaaatttcaacgtagacagtttcctatagctttgtgttttgcaatgactataaa 25226669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 21999726 - 21999460
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| ||||||| || ||||||||||||||||| | ||| | || |    
T  21999726 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcatgtttgtgtaatggtactcgactaatagtcacta 21999627  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| ||||||   ||||||| |     
T  21999626 agatgggaagatatgttattgaagggagggtaatatcatgaagcaatgttggagagaaggtctacataccgagattgtcattgacacaatctgataccaa 21999527  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||    
T  21999526 aattcctttcaaatttcaacgcagacaatttcctatagctttgtgttttacaatgactataaacaaa 21999460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 31891844 - 31891578
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||| | ||||||| |||||||||||| ||| |||| ||||| ||||||||||||||||| | ||  | || |    
T  31891844 aatcacaagattactttgaaagttggagttcttattatgttgttgagaaatttgaacataacaacaggtttgtgtaatggtactcgactaatggtcacta 31891745  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  31891744 agatgggaagatatgttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgatactag 31891645  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||| ||| |||||||||| | ||||||||||||||||||||||||||    
T  31891644 aattcctttcaaatttcaccgcatacagtttcctatagctttgtgttttgcaatgactataaacaaa 31891578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 352
Target Start/End: Original strand, 25169438 - 25169571
Alignment:
Q  219 attggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgtt 318  Q
    ||||||||||| || ||||| ||||| || |||||||| ||| ||||||| |||||||||||||||||| |||| | ||| ||| ||||| |||| || |    
T  25169438 attggggagaacgtgtatattccaagattatcactgacgccgtctgatacaagaattcctttcaaattttagcgtaaacagttttctatatttgtctgct 25169537  T
Q  319 ttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    |||||||||| ||||||||| |  ||||||||||    
T  25169538 ttgcaatgacaataaacaaaagccaagggcaatc 25169571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 337
Target Start/End: Original strand, 4095773 - 4096021
Alignment:
Q  91 aaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaa-gatggggagatatgtt 188  Q
    ||||||| ||| ||||| ||||| |||||||||||||||  | | ||||| || |||||||||||  ||||||||||||||||  | ||| | |||||||    
T  4095773 aaagttggagtccctgtgatgttattgagaaatttggaccaatccgcaggcctatgtaatggtacaagattgataattacaaataacgggtatatatgtt 4095872  T
Q  189 tttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttc 288  Q
     ||||||||| | | ||| ||   |||   ||||| || |||||||||||||||||| ||||||| |||||| | ||||| || || || || || || |    
T  4095873 cttgaagggaagatgataacagatagcaacattggtgataaggtatatataccaaggctgtcactaacaccgtcggatacaaggataccgtttaagttcc 4095972  T
Q  289 agcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaa 337  Q
    | |||||||| |||||| ||  | | |||||||||||||| || |||||    
T  4095973 aacgcagacagtttcctctatctatatgttttgcaatgacaatcaacaa 4096021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 2736564 - 2736682
Alignment:
Q  219 attggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgtt 318  Q
    ||||| || |||||||||||||| ||| || ||||   |||| ||||||| ||||| || |||||||| || || || || |||||||||  ||| ||||    
T  2736564 attggtgacaaggtatatatacctaggctgacactagaaccgtctgatactagaataccgttcaaattccaacgtaggcagtttcctatatctgtttgtt 2736663  T
Q  319 ttgcaatgactataaacaa 337  Q
    |||||||||| || |||||    
T  2736664 ttgcaatgacaatcaacaa 2736682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 2267708 - 2267671
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  2267708 ttgataattacaaagatgggtagatatgttcttgaagg 2267671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 30443257 - 30442992
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  30443257 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 30443158  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| ||| |||  ||||||| ||    
T  30443157 agatgggaagatatgttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattga-accatctgataccag 30443059  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||| ||| |||||||||| | ||||||||||||||||||||||||||    
T  30443058 aattcctttcaaatttcaacgcatacagtttcctatagctttgtgttttgcaatgactataaacaaa 30442992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 327
Target Start/End: Complemental strand, 43026918 - 43026706
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaag 214  Q
    |||||||||||||| |||| ||||| || |||||||| ||| ||||||| |||||||||||||| ||||||||  ||||||| |  |||||| || ||||    
T  43026918 tgagaaatttggacccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataacaggaag 43026819  T
Q  215 cgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtg 314  Q
    |   ||| | || ||||| | ||| || ||  | ||  ||  |||| ||||||| ||||||||||| |||||||| ||  |||| || |||||| ||||     
T  43026818 caatattagagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaatttcaacgtcgacagttccctatatttgtt 43026719  T
Q  315 tgttttgcaatga 327  Q
    |||||||||||||    
T  43026718 tgttttgcaatga 43026706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 37984510 - 37984776
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| || | || || ||||||||||||||||| | ||  | || |    
T  37984510 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataataacatgtttgtgtaatggtactcgactaatggtcacta 37984609  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  37984610 agatgggaagatatgttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccag 37984709  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||    
T  37984710 aattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaa 37984776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 53025255 - 53024989
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || ||||||| |||||||||||||||| ||||| |||  ||||||||||||||||| | ||| | || |    
T  53025255 aatcacaagattactttaaaagttggagttactattatgttgttgagaaatttggacataacagtagggttgtgtaatggtactcgactaatagtcacta 53025156  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||  ||    
T  53025155 agatgggaagatatgttcttaaagggagggttatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgatagcag 53025056  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| ||||||||||||||||||  | |||||||| |||||||||||||||||    
T  53025055 aattcctttcaaatttcaacgcagacaatttcctatatctttgtgttttacaatgactataaacaaa 53024989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 338
Target Start/End: Original strand, 31687310 - 31687561
Alignment:
Q  88 ttgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatg 186  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| || ||| ||| ||||||||||||||||| | ||  | || |||||||| |||||||    
T  31687310 ttgaaagttggagttcctattatgttgttgagaaatttggacataatagctggtttgtgtaatggtactcgactaatggtcactaagatgggaagatatg 31687409  T
Q  187 tttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatt 286  Q
    || ||||||||||||| ||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| |||||||||||||||||    
T  31687410 ttattgaagggagggtaatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccagaattcctttcaaatt 31687509  T
Q  287 tcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    ||| |||||||| ||| |||||| | ||||||||||||| ||||||||||||    
T  31687510 tcaacgcagacagttttctatagctttgtgttttgcaatcactataaacaaa 31687561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 24759350 - 24759084
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || ||||||| |||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  24759350 aatcacaagattactttaaaagttggagttactattatgttgttgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 24759251  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  24759250 agatgggaagatatgttcttaaagggagggttatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccag 24759151  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| || || || |||| ||||  | ||||||||||||||||||||||||||    
T  24759150 aattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaa 24759084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 24826664 - 24826930
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttt-tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || |||||||  ||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  24826664 aatcacaagattactttaaaagttggagttactattatgttgctgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 24826763  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    |||| |||||||| || ||||| || |||||| |||||||  ||||||| ||    
T  24826764 agatgggaagatatgttcttaaagggagggttatatcaggaagcaatgttggagagaaggtctacataccgagattgtcattgacaccatctgataccag 24826863  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| || || || |||| ||||  | ||||||||||||||||||||||||||    
T  24826864 aattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaa 24826930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 33648709 - 33648443
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttt-tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || |||||||  ||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  33648709 aatcacaagattactttaaaagttggagttactattatgttgctgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 33648610  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    |||| |||||||| || ||||  || |||||| |||||||  ||||||| |     
T  33648609 agatgggaagatatgttcttaaagggagggttatatcaggaagcaatgttggagagaaggtctacatactgagattgtcattgacaccatctgataccat 33648510  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| || || || |||||||||  | ||||||||||||||||||||||||||    
T  33648509 aattcctttcaaatttcaacgtagtcagtttcctatatctttgtgttttgcaatgactataaacaaa 33648443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 17689099 - 17689360
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaa 172  Q
    ||||||||||| || |||||||||| ||||||| |||||||  |||||||||||||| |||| || || ||||||||||||||||| | ||| | |  ||    
T  17689099 aatcacaagattactttgaaagttggagttccttttatgtt--gagaaatttggacataacaacacgtttgtgtaatggtactcgactaatagtca-taa 17689195  T
Q  173 gatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgaga 272  Q
    |||||| ||||||||| ||||| ||||||| ||| || |||||    |||| |||||||| || |||||||| |||||| |||| |   ||||||| |||    
T  17689196 gatgggaagatatgttattgaa-ggagggtaatatcaggaagcaatgttggagagaaggtctacataccaagattgtcattgacgcaatctgataccaga 17689294  T
Q  273 attcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||| |||||||||||| |||||||| ||| |||||| | |||||||||||||||| |||||||||    
T  17689295 attcgtttcaaatttcaacgcagacagtttactatagctttgtgttttgcaatgaccataaacaaa 17689360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 338
Target Start/End: Complemental strand, 44703425 - 44703202
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaag 214  Q
    |||| ||||||||| |||| ||||| || |||||||| ||| ||||||| |||||||||||||| | ||||||  ||||||| |  |||||| || ||||    
T  44703425 tgaggaatttggacccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaaaatatgtgcttgaaggaaaagttataacaggaag 44703326  T
Q  215 cgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtg 314  Q
    |   ||||| || ||||| | ||| || ||  | ||  ||  |||| ||||||| ||||||||||| |||||||| ||  ||||||| ||||||  |||     
T  44703325 caatattggagaaaaggtctttattcctagactttcgttggaaccgtctgatacaagaattccttttaaatttcaacgtcgacaattccctatatctgtt 44703226  T
Q  315 tgttttgcaatgactataaacaaa 338  Q
    |||||||||||||| || ||||||    
T  44703225 tgttttgcaatgaccatcaacaaa 44703202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 337
Target Start/End: Complemental strand, 20371120 - 20370855
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    |||||||| ||||  || ||||||| ||| ||| ||||||| ||||||||  | |||  | ||||||| || || ||||||||| | ||||||||||| |    
T  20371120 aatcacaaaataaagttaaaagttggagtacctattatgttgttgagaaagctagaccaatcagcaggactatgcaatggtactaggttgataattacca 20371021  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    |  |||| ||||||||| ||||||| | ||| ||| || | |||   ||||| || ||||||||||||||  ||||| ||||   |||| ||||||| ||    
T  20371020 aagtgggtagatatgttcttgaaggaaaggtgataacaggtagcaacattggtgacaaggtatatatacctcggttgacactagaaccgtctgatactag 20370921  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaa 337  Q
    ||| || |||||||| || || || || |||||||||  ||| |||||||||||||| || |||||    
T  20370920 aataccgttcaaattccaacggaggcagtttcctatatctgtttgttttgcaatgacaatcaacaa 20370855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 925427 - 925508
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||| ||||||||| |||| ||||| || || ||||| ||| ||||||| |||||||||||||| ||||||||  |||||||    
T  925427 tgaggaatttggacccaactgcaggcctttgcaatggaactagattgattattacaaagatgggaagatatgtgcttgaagg 925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 53545111 - 53545208
Alignment:
Q  88 ttgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagata 184  Q
    |||||||| | ||| ||||| ||||| ||||||||||| ||| ||||||||||||| || ||||| || ||  ||||||| ||||||||||| |||||    
T  53545111 ttgaaagtcggagtacctgtcatgttgttgagaaatttagacccaacagcaggtctttgcaatggaacacgcctgataataacaaagatgggcagata 53545208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 43731637 - 43731575
Alignment:
Q  276 cctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||| || |||||| |||| |||| ||| | ||||||||||||||| ||||||    
T  43731637 cctttcaaatttcaacggagacaagttccgatagctgtttcttttgcaatgactattaacaaa 43731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 36155298 - 36155335
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  36155298 ttgataattacaaagatgggtagatatgttcttgaagg 36155335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 38656228 - 38656116
Alignment:
Q  225 gagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaa 324  Q
    |||||||| | ||| |||||||| || || |||||  ||||||  |||||||||||||||||| | || || || ||||| ||| |||| |  |||||||    
T  38656228 gagaaggtgtttattccaaggttatcgctaacaccatctgataatagaattcctttcaaatttaaacgaaggcagtttccgatatttgtctcatttgcaa 38656129  T
Q  325 tgactataaacaa 337  Q
    ||||||| |||||    
T  38656128 tgactattaacaa 38656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 338
Target Start/End: Original strand, 8163563 - 8163828
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||| || |  ||||||||||||||||| | ||| | |  |    
T  8163563 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacatcatggttgtgtaatggtactcgactaatagtcatta 8163662  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgag 271  Q
    ||||||| ||||||||| |||||||||| |||||| || ||||     |||| |||||||| || ||||| || |||||| || ||||  ||||||| |     
T  8163663 agatgggaagatatgttattgaagggagagttatatcaggaagaaatgttggagagaaggtctacataccgagattgtcattgtcaccatctgatacca- 8163761  T
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||||||| |||| | | |||| ||||| | ||||||||||||||||||||||||||    
T  8163762 aattcctttcaaatttcaacgcatatagtttcttatagctttgtgttttgcaatgactataaacaaa 8163828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 88 - 352
Target Start/End: Original strand, 35350974 - 35351239
Alignment:
Q  88 ttgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatg 186  Q
    |||||||||| ||||||| ||||||| |||||||||||||| |  ||| |||   | |||||||| ||||| || ||  ||||||||||| | | ||||     
T  35350974 ttgaaagttggagttcctattatgttgttgagaaatttggatattacaacagacatttgtaatggaactcggttaattcttacaaagatgagaatatata 35351073  T
Q  187 tttttgaagggagggttataccaagaagcgggattggggagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatt 286  Q
    || ||||||| ||||||||| || | |||   |||||||||||||||||||||||||| || ||  |||| ||| ||||||| |||||||||||||||||    
T  35351074 ttcttgaaggcagggttatatcaggtagcaatattggggagaaggtatatataccaagattatcgatgacgccgtctgatacaagaattcctttcaaatt 35351173  T
Q  287 tcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    |||||| |  || ||||||||| |||| || ||||||||||| ||| ||||| |  ||||||||||    
T  35351174 tcagcgtaagcagtttcctatatttgtatgctttgcaatgaccatacacaaaagccaagggcaatc 35351239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 35615138 - 35615214
Alignment:
Q  262 ctgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    ||||||| |||||||| || | |||||| |||||||||||| | ||| |||| ||||||| ||||||||| ||||||    
T  35615138 ctgatacaagaattccctttatatttcaacgcagacaattttcaatatttgtatgttttgtaatgactattaacaaa 35615214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 33686477 - 33686394
Alignment:
Q  225 gagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctata 308  Q
    |||||||| || |||||||| ||||   ||||||   ||||||| | |||||||||||||||||| |||||||| |||||||||    
T  33686477 gagaaggtctacataccaagattgttgttgacactatctgataccataattcctttcaaatttcaacgcagacagtttcctata 33686394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 5337782 - 5337844
Alignment:
Q  276 cctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaa 338  Q
    |||||||||||||| || ||||| ||||| |||||||| | ||| ||||||||||| ||||||    
T  5337782 cctttcaaatttcaacggagacagtttccgatagttgtttctttcgcaatgactattaacaaa 5337844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 18207912 - 18207949
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18207912 ttgataattacaaagatgggtagatatgttcttgaagg 18207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 16804564 - 16804600
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaag 195  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  16804564 ttgataattacaaagatgggtagatatgttcttgaag 16804600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 30045245 - 30045165
Alignment:
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||    
T  30045245 aattcctttcaaatttcagcgcagacaatttcctatagttatgtgttttgcaatgtctataaacaaaagttaagggcaatc 30045165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 30050408 - 30050328
Alignment:
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||    
T  30050408 aattcctttcaaatttcagcgcagacaatttcctatagttatgtgttttgcaatgtctataaacaaaagttaagggcaatc 30050328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 30141452 - 30141372
Alignment:
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||    
T  30141452 aattcctttcaaatttcagcgcagacaatttcctatagttatgtgttttgcaatgtctataaacaaaagttaagggcaatc 30141372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 30243040 - 30242959
Alignment:
Q  272 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtg-ttttgcaatgactataaacaaatgtaaagggcaatc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||    
T  30243040 aattcctttcaaatttcagcgcagacaatttcctatagttgtgtgtttttgcaatgtctataaacaaaagtcaagggcaatc 30242959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 1512567 - 1512679
Alignment:
Q  225 gagaaggtatatataccaaggttgtcactgacaccgactgatacgagaattcctttcaaatttcagcgcagacaatttcctatagttgtgtgttttgcaa 324  Q
    |||||||| | ||| |||||||| || || |||||  ||||||  |||||||||||||||||| | || || || ||||| ||| |||| |  |||||||    
T  1512567 gagaaggtgtttattccaaggttatcgctaacaccatctgataatagaattcctttcaaatttaaacgaaggcagtttccgatatttgtctcatttgcaa 1512666  T
Q  325 tgactataaacaa 337  Q
    ||||||| |||||    
T  1512667 tgactattaacaa 1512679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 79443 - 79394
Alignment:
Q  300 tttcctatagttgtgtgttttgcaatgactataaacaaatgtaaagggca 349  Q
    |||| ||||||||| ||||||||||||||||| |||||| || |||||||    
T  79443 tttcttatagttgtatgttttgcaatgactatgaacaaaagtcaagggca 79394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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