View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18033_low_22 (Length: 348)
Name: NF18033_low_22
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_22 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 28 - 347
Target Start/End: Original strand, 36717341 - 36717658
Alignment:
| Q |
28 |
ttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttgg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36717341 |
ttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttgg |
36717438 |
T |
|
| Q |
128 |
agatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717439 |
agatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggat |
36717538 |
T |
|
| Q |
228 |
ttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagag |
327 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717539 |
ttgagccctataactgataaattgtggaaaaaattctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagag |
36717638 |
T |
|
| Q |
328 |
tttcgttcacttggttgcag |
347 |
Q |
| |
|
|||| ||||||||||||||| |
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| T |
36717639 |
tttcattcacttggttgcag |
36717658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 2041366 - 2041032
Alignment:
| Q |
11 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataa |
110 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
2041366 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataa |
2041267 |
T |
|
| Q |
111 |
aatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaagg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2041266 |
--tgtaaaataccttggagatgttagtcatgttgatcatgatatgcttgagagaatcttgcctcactgcacacttgaccagttgatgcatattgagaagt |
2041169 |
T |
|
| Q |
211 |
caagtgaagggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaa |
310 |
Q |
| |
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| | | |||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041168 |
ccactcaagggatggatttgagccctataacagatcaattgtggagaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaa |
2041069 |
T |
|
| Q |
311 |
gatgaaagaaaaaagagtttcgttcacttggttgcag |
347 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2041068 |
gatgaaagaaaaaagagtttcattcacttggttgcag |
2041032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 43 - 347
Target Start/End: Original strand, 1357444 - 1357746
Alignment:
| Q |
43 |
cctgttatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgt |
1357541 |
T |
|
| Q |
143 |
tgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataaga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||| | |
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|
| T |
1357542 |
tgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataaca |
1357641 |
T |
|
| Q |
243 |
gataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcgttcacttggt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1357642 |
gataaattgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggt |
1357741 |
T |
|
| Q |
343 |
tgcag |
347 |
Q |
| |
|
||||| |
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|
| T |
1357742 |
tgcag |
1357746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 1352291 - 1352599
Alignment:
| Q |
11 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataa |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
1352291 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
1352390 |
T |
|
| Q |
111 |
aatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaagg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1352391 |
--tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaaga |
1352488 |
T |
|
| Q |
211 |
caagtgaagggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaa |
310 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1352489 |
caaataaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatgaagtagttaagaa |
1352588 |
T |
|
| Q |
311 |
gatgaaagaaa |
321 |
Q |
| |
|
||||||||||| |
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|
| T |
1352589 |
gatgaaagaaa |
1352599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 97 - 321
Target Start/End: Original strand, 1364328 - 1364550
Alignment:
| Q |
97 |
aaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgat |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1364328 |
aaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgat |
1364425 |
T |
|
| Q |
197 |
gcatattgagaaggcaagtgaagggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaat |
296 |
Q |
| |
|
||||||||||||| | | | |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
1364426 |
gcatattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaat |
1364525 |
T |
|
| Q |
297 |
gaagtagttaagaagatgaaagaaa |
321 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1364526 |
gaagtagttaagaagatgaaagaaa |
1364550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 49 - 345
Target Start/End: Complemental strand, 24620630 - 24620337
Alignment:
| Q |
49 |
atgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatca |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatca |
24620533 |
T |
|
| Q |
149 |
tcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataaa |
248 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| | |||| ||||||||||||||| |||| ||||| |
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|
| T |
24620532 |
tcatatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatatatcgaataaa |
24620434 |
T |
|
| Q |
249 |
ttgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcgttcacttggttgc |
345 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
24620433 |
ctgtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 18180026 - 18179897
Alignment:
| Q |
219 |
gggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaag |
318 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||| || ||||| || |
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|
| T |
18180026 |
gggatggatttgagcccggtaacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacag |
18179927 |
T |
|
| Q |
319 |
aaaaaagagtttcgttcacttggttgcagt |
348 |
Q |
| |
|
|||||||||| || |||| |||||||||| |
|
|
| T |
18179926 |
aaaaaagagtgtcattcagatggttgcagt |
18179897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 18180255 - 18180117
Alignment:
| Q |
71 |
catctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttg |
170 |
Q |
| |
|
||||| ||||||| ||||||||| | | |||||| ||||| | ||| |||||||||| ||||| ||| ||||||||||||| ||||||| |||||||| |
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|
| T |
18180255 |
catctctggttgatctttgtgttcaaacagctatagataa--tttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttg |
18180158 |
T |
|
| Q |
171 |
cctcactgcacacttgatcagttgatgcatattgagaaggc |
211 |
Q |
| |
|
|| |||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
18180157 |
ccacactgcacacttgaccagttgacgcatatcgagaaggc |
18180117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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