View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_25 (Length: 327)
Name: NF18033_low_25
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 2169005 - 2168829
Alignment:
| Q |
19 |
aatccatcaaacctactactcttcttgtccttgtctgagtctctgccttaagtt-aaaatgttcgttggcatttttaacctttgtgttgggtttgggaac |
117 |
Q |
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| T |
2169005 |
aatccaccaaacctactactctt---gtccttgtctgagtctctaccttaagtttaaaatgttcgttgacatttttaacctttgtgttgggtttgggaac |
2168909 |
T |
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| Q |
118 |
agtcagagaatacagagtcaatagacagatcgtaaccatagatttgttaaatgttaccccacgttaaaataatagaaatc |
197 |
Q |
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| T |
2168908 |
agtccgagaatacatagtcaatagacagatcgtaatcatagatttgttaaatgttaccccacgttaaaataatataaatc |
2168829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 2168771 - 2168727
Alignment:
| Q |
273 |
ttacagaagacatcattccaatttttagagtaaagttgagtataa |
317 |
Q |
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| T |
2168771 |
ttacagaagacatcattccaatttttagagtaaagttgagtataa |
2168727 |
T |
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