View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_26 (Length: 321)
Name: NF18033_low_26
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 38094332 - 38094608
Alignment:
| Q |
17 |
cactaacgatgtctatccctttttccttcttgaaataatcaatatattctttttaagaaaacaaaccatacaattatttaaaaatagtattttctttttg |
116 |
Q |
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| T |
38094332 |
cactaacgatgtctatccctttttccttcttgaaataatcaatatattctttttaagaaaacaaaccatacaattatttaaaaatagtattttctttttg |
38094431 |
T |
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| Q |
117 |
agatgttatgagatatatttgtaaacctattttatcatacaaattagatttttaaaattgtatatttggttctgtnnnnnnntaaattatactaggctta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38094432 |
agatgttatgagatatatttgtaaacctattttatcatacaaattagatttttaaaattgtatatttggttctgtaaaaaaataaattatactaggctta |
38094531 |
T |
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| Q |
217 |
gctaactttttagtcccttaatacatttttgatgtaaaaattgactacctatccttaattaatacatttaagttcat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38094532 |
gctaactttttagtcccttaatacatttttgatgtaaaaattgactacctatccttaattaatacatttaagttcat |
38094608 |
T |
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