View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_3 (Length: 695)
Name: NF18033_low_3
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 94 - 682
Target Start/End: Complemental strand, 43751236 - 43750652
Alignment:
| Q |
94 |
tgaagctattgaaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaattttttgctttgttt |
193 |
Q |
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| T |
43751236 |
tgaagctattgaaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaattttttgctttgttt |
43751137 |
T |
|
| Q |
194 |
aaagcttcagcaatttttgaagttgaattcttcggctcttgatcatgcttcacattaaggcattcagtggtatcttcactctcctctaagaaattgaaaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43751136 |
aaagcttcagcaatttttgaagttgaattcttcggctcttgatcat---tcacattaaggcattcagtggtatcttcactctcctctaagaaattgaaaa |
43751040 |
T |
|
| Q |
294 |
tggcatgttatnnnnnnntgaatctcaaaaatcaaaatcttagttagataaatgaaatgatagagattaatccaatcaagaattttttatacctttaact |
393 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43751039 |
tggcatgttataaaaaa-tgaatctcaaaaatcaaaatcttagttagataaatgaaatgatagagattaatccaatcaagaattttttatacctttaact |
43750941 |
T |
|
| Q |
394 |
tggacaagtttaggannnnnnnncaatttggagcttgttccaacgtcttcgcttgcgccaattctcgatttcttatgtggttgaagacttgaaatttgtg |
493 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43750940 |
tggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgccaattctcgatttcttatgtggttgaagacttgaaatttgtg |
43750841 |
T |
|
| Q |
494 |
attttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttctgctcatgttgattatttccatcaacgtgatattcaatttc |
593 |
Q |
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| T |
43750840 |
attttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttctgctcatgttgattatttccatcaacgtgatattcaatttc |
43750741 |
T |
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| Q |
594 |
caaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacatcagcatgtgtccatgatctatagaataat |
682 |
Q |
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| T |
43750740 |
caaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacatcagcatgtgtccatgatctatagaataat |
43750652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 105 - 682
Target Start/End: Complemental strand, 49164762 - 49164186
Alignment:
| Q |
105 |
aaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaattttttgctttgtttaaagcttcagc |
204 |
Q |
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| T |
49164762 |
aaagactcaccatgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaac |
49164663 |
T |
|
| Q |
205 |
aatttttgaagttgaattcttcggctcttgatcatgcttcacattaaggcattcagtggtatcttcactctcctctaagaaattgaaaatggcatgttat |
304 |
Q |
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| T |
49164662 |
aattttagcagttgaattcctctgctcttgaccatgcttcacattcaggcatttagtggtagaatcaatctcttctgagaaattgaatatggtatgtaat |
49164563 |
T |
|
| Q |
305 |
nnnnnnntgaatctcaaaaatcaaaatcttagttagataaatgaaatgatagagattaatccaatcaagaattttttatacctttaacttggacaagttt |
404 |
Q |
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| T |
49164562 |
gaaaaa-tcaacatcaaaaatcaaaatcttgattaaataaatgaaatgatagagattaatccaaccatgaatttattatacctttaacttggacaagttt |
49164464 |
T |
|
| Q |
405 |
aggannnnnnnncaatttggagcttgttccaacgtcttcgcttgcgccaattctcgatttcttatgtggttgaagacttgaaatttgtgattttggtcta |
504 |
Q |
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|||| | ||||||||||||||||||| ||||| |||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
49164463 |
aggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgagaacttgaaatttgtgattttggtcta |
49164364 |
T |
|
| Q |
505 |
gtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttctgctcatgttgattatttccatcaacgtgatattcaatttccaaagtactct |
604 |
Q |
| |
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|||||||| | | ||||| ||||||||| |||||| | ||| |||| |||||||||||||| |||||||| ||||||| ||||| |||||||||| |
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| T |
49164363 |
ctcttcttgtaagaaggttgctcatccaaaatttcaattggattgctctgttcatgttgattattaccatcaacacgatattcgatttcaaaagtactct |
49164264 |
T |
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| Q |
605 |
tgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacatcagcatgtgtccatgatctatagaataat |
682 |
Q |
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||| ||| ||||||| || ||||||||| ||||| | ||||||||||| || |||||| |||||||||| ||||||| |
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| T |
49164263 |
tgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaatgaataat |
49164186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 580 - 673
Target Start/End: Complemental strand, 12880916 - 12880823
Alignment:
| Q |
580 |
tgatattcaatttccaaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacatcagcatgtgtccatgatcta |
673 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||| || |||||| ||| |||||| ||||||||||| | |||||||||||| |||| |
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| T |
12880916 |
tgatattcaatttcaaaagtactctggtaaaatatgtaaacctcaaaatgtgatatttttttatattgaaacaccgtcatgtgtccatggtcta |
12880823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 12874131 - 12874043
Alignment:
| Q |
424 |
gagcttgttccaacgtcttcgcttgcgccaattctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttctt |
512 |
Q |
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| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgaggacacataattggcgattttggtctagttttctt |
12874043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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