View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_30 (Length: 254)
Name: NF18033_low_30
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 32126307 - 32126539
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
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| T |
32126307 |
agattattctccaactgataccctccaatcacaatagaagtccttaggttcacaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
32126406 |
T |
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| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtgaagcaagctcaatcgtaggcacagatgcacccaatggcgtccctggcaaattgtc |
207 |
Q |
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| T |
32126407 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtaaaagaagctcaattgtaggcacagacgcacccaatggcgtccctggcaaattgtc |
32126506 |
T |
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| Q |
208 |
aaaactataacaaaattcaaaaggcggagatga |
240 |
Q |
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| T |
32126507 |
aaaactataacaaaattcaaaaggcggagatga |
32126539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 32147504 - 32147667
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
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| T |
32147504 |
agattattctccaactgataccctccaatcacaattgaagcccatgtattctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattca |
32147603 |
T |
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| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtgaagcaagctcaatcgtagg |
171 |
Q |
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| T |
32147604 |
ccattgaatttgcaccaaatatcctccaaatcacattgttctgcaaataaagctcaatagtagg |
32147667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 32138111 - 32138247
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||| |||||||||||| ||| |
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| T |
32138111 |
agattattctccaactgataccctccaatcacaattgaagtccttgtattcttaccaccattcacaaatccaagacacaaaacttcatcatttatactca |
32138210 |
T |
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| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacatt |
144 |
Q |
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| T |
32138211 |
ccattgaatttgcaccaaatatcctccaaaccacatt |
32138247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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