View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_31 (Length: 249)
Name: NF18033_low_31
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 25944408 - 25944173
Alignment:
| Q |
2 |
caacctttttaatttccatgattttgttaaaatggtcttatatttaaaaacagagctagtaattccaatttaacaccttagctattagtgtcactttcat |
101 |
Q |
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| T |
25944408 |
caacctttttcatttccgtaattttgtcaaaatggtcctatatttagagatagagttagtaattctaatttgacaccttagctattagtgtcactttcat |
25944309 |
T |
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| Q |
102 |
gtaggtaatatttatatttaagtagtatgatattttgataattttactaatttactaatggatatgaatttcacttctgtatccattaactaacaagtag |
201 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
25944308 |
gtagataatatttatatttaaatagtatgatattttgataattttaataatttactaatggatatgaatttcacttatgtatccattaactaataagtag |
25944209 |
T |
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| Q |
202 |
gtgaaatatttatttatttcaatggatatccgttca |
237 |
Q |
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| T |
25944208 |
gtgaaatatctatttagttaagtggatatccgttca |
25944173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 2061281 - 2061312
Alignment:
| Q |
130 |
gatattttgataattttactaatttactaatg |
161 |
Q |
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| T |
2061281 |
gatattttgataattttactaatttactaatg |
2061312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 870168 - 870207
Alignment:
| Q |
128 |
atgatattttgataattttactaatttactaatggatatg |
167 |
Q |
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| T |
870168 |
atgatattttgataatttcattaatttactaatggatatg |
870207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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