View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_33 (Length: 238)
Name: NF18033_low_33
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_33 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 31737184 - 31737405
Alignment:
| Q |
17 |
atgtgtcatttggaaactatcacatgtgagtgcgtttaagcatatcgagtattatattgttgctttaaacccttctgatgatgaaatatttggcatgcag |
116 |
Q |
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| T |
31737184 |
atgtgtcatttggaaattatcacatgtgagtgagtttaagcatattgagtattatattattgctttaaacccttctgatgatgaaatatttggcatgcag |
31737283 |
T |
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| Q |
117 |
atggttagtgttgatcaattgctaatgaccaaagcatgtgaggtttttcttaaagacctcacaaatcttgccttgcttaatgctaaagagaaaaatgagc |
216 |
Q |
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| T |
31737284 |
atggttagtgttgatcaattgctaatgaccaaagcatgtgaggtttttcttaaagacctcacaaatcttgccttgcttaatgctaaagagaaaaatgagc |
31737383 |
T |
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| Q |
217 |
gtatcgtgaagccttgtgatgt |
238 |
Q |
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| T |
31737384 |
gtatcgtgaagccttgtgatgt |
31737405 |
T |
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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 422418 - 422320
Alignment:
| Q |
92 |
tgatgatgaaatatttggcatgcagatggttagtgttga---tcaattgctaatgaccaaagcatgtgaggtttttcttaaagacctcacaaatcttgc |
187 |
Q |
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| T |
422418 |
tgatgttgaaatatttggtatgcagatagttagtgttgaatctgaattgctaatcgcaaaaacatgtgaggttttcgttaaagacgtcccacatcttgc |
422320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 426145 - 426068
Alignment:
| Q |
98 |
tgaaatatttggcatgcagatggttagtgttga---tcaattgctaatgaccaaagcatgtgaggtttttcttaaaga |
172 |
Q |
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| T |
426145 |
tgaaatatttggtatgcagatagttagtgttgaatctcaattgctaatcgcaaaaacatgcgaggttttccttaaaga |
426068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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