View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_36 (Length: 235)
Name: NF18033_low_36
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 29571797 - 29571589
Alignment:
| Q |
11 |
agattattcttgaggttcttgttcagattgtgtttgagtttgctcaattgttgcattagaaagtaacttgtgtgtaactggatcaattcccattttcttg |
110 |
Q |
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| T |
29571797 |
agattgttgttgaggttcttgttcagattgtgtttgagtttgctcaattattgcattagaaagtaacttgtgtgtaaccggatcaattcccattttcttg |
29571698 |
T |
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| Q |
111 |
agctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttggaccatctgcataagaaaaaag |
210 |
Q |
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| T |
29571697 |
agctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttggaccatctgcataagaaaaaag |
29571598 |
T |
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| Q |
211 |
gattaatat |
219 |
Q |
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|||||||| |
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| T |
29571597 |
aattaatat |
29571589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 33379933 - 33379814
Alignment:
| Q |
90 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttgg |
189 |
Q |
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| T |
33379933 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattttttatttcattatccgttcttccaggtaaatgagaagcaatcttag |
33379834 |
T |
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| Q |
190 |
accatctgcataagaaaaaa |
209 |
Q |
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| T |
33379833 |
accatctgtaaaagaaaaaa |
33379814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 443159 - 443222
Alignment:
| Q |
20 |
ttgaggttcttgttcagattgtgtttgagtttgctcaattgttgcattagaaagtaacttgtgtgta |
86 |
Q |
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| T |
443159 |
ttgatgttgttgttcagattgtgtttgagttttctcaa---ttgcattagagagtaacttgtgtgta |
443222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 42422618 - 42422690
Alignment:
| Q |
90 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttc |
162 |
Q |
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| T |
42422618 |
ggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgatttttaatctcattgtctgttc |
42422690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 3911948 - 3911920
Alignment:
| Q |
78 |
ttgtgtgtaactggatcaattcccatttt |
106 |
Q |
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| T |
3911948 |
ttgtgtgtaactggatcaattcccatttt |
3911920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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