View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_38 (Length: 227)
Name: NF18033_low_38
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_38 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 48145271 - 48145480
Alignment:
| Q |
18 |
aaaccaacatccactattgactctacaacattctcataaacccaaaataaaatcgatgttacctatctagcatcaagagcgcagccaattaagtcattcc |
117 |
Q |
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| T |
48145271 |
aaaccaacatccactattgactctacaacattctcataaacccaaaataaaatcgatgttacctatctagcatcaagagcgcagccaattaagtcattcc |
48145370 |
T |
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| Q |
118 |
attttaaacattaagaaaatatgatcttaatgctcaaatttatttcacctaaaatacttaaagtcactttttatttatttattattagagaaatgatatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48145371 |
attttaaacattaagaaaatatgatcttaatgctcaaatttatttcatctaaaatacttaaagtcactttttatttatttattatcagagaaatgatatt |
48145470 |
T |
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| Q |
218 |
tgtacaacca |
227 |
Q |
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|||||||||| |
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| T |
48145471 |
tgtacaacca |
48145480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 24380789 - 24380759
Alignment:
| Q |
197 |
tattattagagaaatgatatttgtacaacca |
227 |
Q |
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| T |
24380789 |
tattattagagaaatgatatttgtacaacca |
24380759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 9055257 - 9055289
Alignment:
| Q |
195 |
tttattattagagaaatgatatttgtacaacca |
227 |
Q |
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| T |
9055257 |
tttattataagagaaatgatatttgtacaacca |
9055289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 28300727 - 28300697
Alignment:
| Q |
197 |
tattattagagaaatgatatttgtacaacca |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28300727 |
tattattagagaaatgatatttgtacaacca |
28300697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 30973591 - 30973619
Alignment:
| Q |
199 |
ttattagagaaatgatatttgtacaacca |
227 |
Q |
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| T |
30973591 |
ttattagagaaatgatatttgtacaacca |
30973619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 2308399 - 2308371
Alignment:
| Q |
199 |
ttattagagaaatgatatttgtacaacca |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2308399 |
ttattagagaaatgatatttgtacaacca |
2308371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 47386871 - 47386843
Alignment:
| Q |
199 |
ttattagagaaatgatatttgtacaacca |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47386871 |
ttattagagaaatgatatttgtacaacca |
47386843 |
T |
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