View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_4 (Length: 641)
Name: NF18033_low_4
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 20 - 635
Target Start/End: Complemental strand, 43130617 - 43130002
Alignment:
| Q |
20 |
caaccccattgacttgagaagaatgagaattattagtactatcatgctcctttggtgtttttgtaacgaacccatagtgccccaaaatctcaaaccccca |
119 |
Q |
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| T |
43130617 |
caaccccattgacttgagaagaatgagaattattagtactatcatgctcctttggtgtttttgtaacgaacccatagtgccccaaaatctcaaaccccca |
43130518 |
T |
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| Q |
120 |
atcccaaatattcaacacaatgtaagtaccaatcccaccaataagcccatatgcaatagaatacgtcaaaggcataagtatcattgtcacaaacgcaggt |
219 |
Q |
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| T |
43130517 |
atcccaaatattcaacacaatgtaagtaccaatcccaccaataagcccatatgcaatagaatacgtcaaaggcataagtatcattgtcacaaacgcaggt |
43130418 |
T |
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| Q |
220 |
attgcttgtctcatatcttcccaatcaatctccaccactgatctcatcatcaaaactcccactaaaatcaacggtggtcccacagcccaagccggaatcg |
319 |
Q |
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| T |
43130417 |
attgcttgtctcatatcttcccaatcaatctccaccactgatctcatcatcaaaactcccactaaaatcaatggtggtcccacagcccaagccggaatcg |
43130318 |
T |
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| Q |
320 |
aagccaacaacggtgtaaaaaacaacgccatgaaaaaataaccagccaccgtcaacgccgttatccccgttcttccaccttctcttatccccgttgaaga |
419 |
Q |
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| T |
43130317 |
aagccaacaacggtgtaaaaaacaacgccatgaaaaaataaccagccaccgtcaacgccgttatccccgttcttccaccttctcttatccccgttgaaga |
43130218 |
T |
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| Q |
420 |
ctcaataaacgccgttaccggtgaagttcctaacaacgaccccacaacaatcgacgtggcatccgacataaacgcaaagtattgtccctcaaaatctccg |
519 |
Q |
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| T |
43130217 |
ctcaataaacgccgttaccggtgaagttcctaacaacgaccccacaacaatcgacgtggcatccgacataaacgcaaagtattgtccctcaaaatctccg |
43130118 |
T |
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| Q |
520 |
ttttcgtcggtgaaacctgcgaaccttgccatagaatacaacgttcctgtcgtgtctaaaatgtccacgtataaaaatgttaccacagcttcccaaaaat |
619 |
Q |
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| T |
43130117 |
ttttcgtcggtgaaacctgcgaaccttgccatagaatacaacgttcctgtcgtgtctaaaatgtccacgtataaaaatgttaccacagcttcccaaaaat |
43130018 |
T |
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| Q |
620 |
accctttacctatgct |
635 |
Q |
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| T |
43130017 |
accctttacctatgct |
43130002 |
T |
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