View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18033_low_40 (Length: 207)

Name: NF18033_low_40
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18033_low_40
NF18033_low_40
[»] chr2 (20 HSPs)
chr2 (6-197)||(15013490-15013681)
chr2 (6-197)||(31969410-31969601)
chr2 (14-197)||(15003760-15003943)
chr2 (14-197)||(15019993-15020176)
chr2 (14-194)||(15024028-15024208)
chr2 (14-185)||(14547392-14547563)
chr2 (14-197)||(14552602-14552785)
chr2 (15-197)||(14529026-14529208)
chr2 (15-197)||(14543252-14543434)
chr2 (23-188)||(14534259-14534424)
chr2 (36-186)||(14567663-14567813)
chr2 (14-197)||(15008091-15008274)
chr2 (14-186)||(14520409-14520578)
chr2 (48-197)||(14525198-14525347)
chr2 (15-186)||(14512576-14512747)
chr2 (33-197)||(14850216-14850380)
chr2 (158-192)||(14161838-14161872)
chr2 (145-191)||(14480919-14480965)
chr2 (156-185)||(14168641-14168670)
chr2 (147-188)||(14485650-14485691)
[»] chr4 (1 HSPs)
chr4 (159-187)||(49553799-49553827)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 15013490 - 15013681
Alignment:
Q  6 actaggaaatctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctt 105  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15013490 actaggaaatctatatattgttcaaatgatttgattaagtcattggaggacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctt 15013589  T
Q  106 tggtggccaggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  15013590 tggtgaccaagcattgtatgagtaacatactttgggataagaaagttgacgtctttaagaaatggggttggtctgatgaagatgttattcga 15013681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 31969410 - 31969601
Alignment:
Q  6 actaggaaatctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctt 105  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  31969410 actaggaaatctatatcttgttcaaatgatttgattaagtcattggaggacgttaagggtttagggtttgacccttcaacgatcgcatttgggactgctt 31969509  T
Q  106 tggtggccaggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  31969510 tggtgaccaagcaatgtatgagtaacatactttgggataagaaagttgacgtctttaagaaatggggttggtctgatgaagatgttattcga 31969601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 15003943 - 15003760
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||| || |||||||||| |||||||||| | |||||| |||||||||||||| |||||||| || ||||||||||||||||| || ||    
T  15003943 atctatatttggttcaaaggatttgattatgtcattggaggaagttaagtgtttagggtttgacgcttcaacgaccacttttgggactgctttgatgacc 15003844  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    | ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  15003843 aagcaatgtatgagtaaaatactttgggataagaaagttgacgtctttaagaaatggggttggtctgatgaagatgttattcga 15003760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 15019993 - 15020176
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||| |||||| ||||||||| ||||||| |  ||||||||||||||||| | ||||||||| |||||||||||||||||||| || ||    
T  15019993 atctatatttggttcaaatgatatgattaagttattggaggaaattaagggtttagggtttaaaccttcaacgaccgcttttgggactgctttgatgacc 15020092  T
Q  114 aggca-ttgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    | ||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  15020093 aagcaattgt-tgggtaacatactttgggataagaaagttgacgtctttaagaaatggggttggtctgatgaagatgttattcga 15020176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 15024028 - 15024208
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||| || ||||||||||||||||||||| | |||||| ||||||||||||| |||||||| ||  ||||||||  ||||||||| |||    
T  15024028 atctatatttggttcaaaggatttgattaagtcattggaggaagttaagagtttagggtttgatccttcaacagcttcttttggggttgctttggtagcc 15024127  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgtt 194  Q
    | | |  |||||||||| | |||||||||| |||||| ||||  |||||||||||||||||||||||||||| ||||||||    
T  15024128 aagaaaggtatgagtaaaaaactttgggatgagaaagttgacacctttaagaaatggggttggtctgatgaaaatattgtt 15024208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 14547392 - 14547563
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||||| |||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||  |||||||| |||||||| | |||    
T  14547392 atctatatttggttcgactgatttgattaagtcattggaggaagttaagtgtttagggtttgatccttcaacggctacttttggggctgctttgttcgcc 14547491  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaa 185  Q
    | | | ||||||||||| | ||  |||||| ||||||  | |||||||||||||||||||||||||||||||    
T  14547492 aagaaatgtatgagtaaaacacgatgggatgagaaagtcgccgtctttaagaaatggggttggtctgatgaa 14547563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 14552602 - 14552785
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| |||||| || ||||||||||||||||||||| | ||||| |||||||||||| | ||  |||   |  |||||||| |||||||| | |||    
T  14552602 atctatattttgttcaaaggatttgattaagtcattggaggaagttaaaggtttagggtttcatcccccaatcactacttttggggctgctttgatagcc 14552701  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    | | |  |||||||||| | |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| || |||||    
T  14552702 aagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaagatgttattcga 14552785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 14529026 - 14529208
Alignment:
Q  15 tctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcca 114  Q
    ||||||| | |||| || ||||||||||||||||||||| | ||||||| |||||||||| | ||||||| | |   |||||||||||||||| ||||||    
T  14529026 tctatatttggttcaaaggatttgattaagtcattggaggaagttaaggatttagggtttcatccttcaatgactaattttgggactgctttgatggcca 14529125  T
Q  115 ggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
     | | ||||||||||| | |||||||||| |||||  |||   ||||||||||||||||||||||||||| | |||| |||||    
T  14529126 agaaatgtatgagtaaaaaactttgggatgagaaaattgatacctttaagaaatggggttggtctgatgaggctattattcga 14529208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 14543252 - 14543434
Alignment:
Q  15 tctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcca 114  Q
    ||||||| | |||| || ||||||||||||||||||||| | ||||||| |||||||||| | ||||||| | |   |||||||||||||||| ||||||    
T  14543252 tctatatttggttcaaaggatttgattaagtcattggaggaagttaaggatttagggtttcatccttcaatgactaattttgggactgctttgatggcca 14543351  T
Q  115 ggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
     | | ||||||||||| | |||||||||| |||||  |||   ||||||||||||||||||||||||||| | |||| |||||    
T  14543352 agaaatgtatgagtaaaaaactttgggatgagaaaattgatacctttaagaaatggggttggtctgatgaggctattattcga 14543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 14534259 - 14534424
Alignment:
Q  23 ttgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggccaggcattgt 122  Q
    |||||| || ||||||||||| ||||||||| |  ||||||||||||||||||| ||||||||| |  ||||||||  ||||||| | ||||   | |||    
T  14534259 ttgttcaaaggatttgattaattcattggaggaaattaagggtttagggtttgatccttcaacgactacttttgggtatgctttgttagccaataactgt 14534358  T
Q  123 atgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagat 188  Q
    | |||||| | |||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||    
T  14534359 acgagtaaaaaactttgggatgagaaagttgatgtcttgaagaaatggggttggtctgatgaagat 14534424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 14567663 - 14567813
Alignment:
Q  36 ttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggccaggcattgtatgagtaacatac 135  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||| ||  ||||||||  ||||||||  |||| | | |||||||| || | ||    
T  14567663 ttgattaagtcattggaggaagttaagagtttagggtttgatccttcaacagcttcttttggggttgctttggcagccaagaaatgtatgagaaaaaaac 14567762  T
Q  136 tttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaag 186  Q
     ||||||| |||||| ||| | |||||||||||||||||||||||||||||    
T  14567763 gttgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaag 14567813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 15008091 - 15008274
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||| | |||||||||||||||||| ||| | |||||| ||||||||||| | ||||||||  |  |||||||||||||||||   |||    
T  15008091 atctatatttggttcaactgatttgattaagtcattagaggaagttaagcgtttagggtttcatccttcaacaactacttttgggactgctttgacagcc 15008190  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    | | |  || | ||||| | |||||||||| |||||| ||| | ||||||||||||||||||||||||||||||| || |||||    
T  15008191 aagaaaggtttaagtaaaaaactttgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaagatgttattcga 15008274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 14520409 - 14520578
Alignment:
Q  14 atctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcc 113  Q
    |||||||| | |||| | |||||||||||||||||| ||| | |||||| ||||||||||| | ||||||| | |  |||||||| |||||||| | |||    
T  14520409 atctatatttggttcaactgatttgattaagtcattagaggaagttaagtgtttagggtttcatccttcaaagactacttttggggctgctttgatagcc 14520508  T
Q  114 aggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaag 186  Q
    | | | ||||   |||| | |||||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  14520509 aagaaatgta---gtaaaaaactttgggatgagaaagttgatgtctttaagaaatggggctggtctgatgaag 14520578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 14525198 - 14525347
Alignment:
Q  48 ttggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggccaggcattgtatgagtaacatactttgggataaga 147  Q
    |||||| | |||||||||||||||||| ||| ||||||  |  |||||||| | |||||||| || | | | ||||||||||| | |||||||||| |||    
T  14525198 ttggaggaagttaagggtttagggtttcacctttcaacttcaacttttggggcagctttggttgcaaagaaatgtatgagtaaaacactttgggatgaga 14525297  T
Q  148 aagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
    ||| ||| || |||||||||||||||||| ||||||||||| || |||||    
T  14525298 aagttgatgtttttaagaaatggggttggactgatgaagatgttattcga 14525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 14512576 - 14512747
Alignment:
Q  15 tctatatattgttcgaatgatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggcca 114  Q
    ||||||| | |||| || ||||||||||||||||| ||| | ||||||| |||||||||| | ||||||  | |  ||||| || |||||||| | ||||    
T  14512576 tctatatttggttcaaaggatttgattaagtcattagaggaagttaaggatttagggtttcatccttcattgactacttttagggctgctttgatagcca 14512675  T
Q  115 ggcattgtatgagtaacatactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaag 186  Q
     | |  |||||| ||| | ||||||||||||||||| ||| |||||||||||| |||||||||||| |||||    
T  14512676 agaaaggtatgactaaaaaactttgggataagaaagttgatgtctttaagaaacggggttggtctggtgaag 14512747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 14850380 - 14850216
Alignment:
Q  33 gatttgattaagtcattggagtacgttaagggtttagggtttgacccttcaacggccgcttttgggactgctttggtggccaggcattgtatgagtaaca 132  Q
    ||||||||||||||||||||| | |||||| ||||||||||||| ||||||| |     |||||| | |||||| |  || | | |  || ||||||| |    
T  14850380 gatttgattaagtcattggaggaagttaagtgtttagggtttgatccttcaaagaatagttttggaattgctttagcagcaaagaaaggtttgagtaaaa 14850281  T
Q  133 tactttgggataagaaagctgacgtctttaagaaatggggttggtctgatgaagatattgttcga 197  Q
     |||||||||| |||||| ||| | ||||||||||||||||||||||||||||||| || |||||    
T  14850280 aactttgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaagatgttattcga 14850216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 14161872 - 14161838
Alignment:
Q  158 ctttaagaaatggggttggtctgatgaagatattg 192  Q
    ||||||||||||||| |||||||||||||||||||    
T  14161872 ctttaagaaatggggctggtctgatgaagatattg 14161838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 14480965 - 14480919
Alignment:
Q  145 agaaagctgacgtctttaagaaatggggttggtctgatgaagatatt 191  Q
    |||||| ||| | ||||||||| ||||||||||||||||||||||||    
T  14480965 agaaagttgatgcctttaagaagtggggttggtctgatgaagatatt 14480919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 14168670 - 14168641
Alignment:
Q  156 gtctttaagaaatggggttggtctgatgaa 185  Q
    ||||||||||||||||||||||||||||||    
T  14168670 gtctttaagaaatggggttggtctgatgaa 14168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 14485650 - 14485691
Alignment:
Q  147 aaagctgacgtctttaagaaatggggttggtctgatgaagat 188  Q
    |||| ||| ||||||||||||||||| |||||||||||||||    
T  14485650 aaagttgatgtctttaagaaatggggatggtctgatgaagat 14485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 49553799 - 49553827
Alignment:
Q  159 tttaagaaatggggttggtctgatgaaga 187  Q
    |||||||||||||||||||||||||||||    
T  49553799 tttaagaaatggggttggtctgatgaaga 49553827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University