View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_42 (Length: 201)
Name: NF18033_low_42
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 29020102 - 29020237
Alignment:
| Q |
48 |
taacgaaagaatctataagtcttctctccacatatcaaaccaccaaaatcgagtttccaccatcttttcttcaataggttctatgctaccctaattctcc |
147 |
Q |
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| T |
29020102 |
taacgaaagaatctataagtcttctctccacatatcaaaccaccaaagtcgagtttccaccatcttttcttcaata-gttctatgctaccctaattctcc |
29020200 |
T |
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| Q |
148 |
cattctctctaatgttatcattcctaatcatattcat |
184 |
Q |
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| T |
29020201 |
ccttctctctaattttatcattcctaatcatattcat |
29020237 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 2518596 - 2518657
Alignment:
| Q |
57 |
aatctataagtcttctctccacata-tcaaaccaccaaaatcgagtttccaccatcttttct |
117 |
Q |
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| T |
2518596 |
aatctacaagtcttctctctacataatcaaaccacctaaacctattttccaccatcttttct |
2518657 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 22576094 - 22576053
Alignment:
| Q |
84 |
aaaccaccaaaatcgagtttccaccatcttttcttcaatagg |
125 |
Q |
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| T |
22576094 |
aaaccacccaagtcgagtttccaccatcttttctacaatagg |
22576053 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 38903924 - 38903985
Alignment:
| Q |
57 |
aatctataagtcttctctccacata-tcaaaccaccaaaatcgagtttccaccatcttttct |
117 |
Q |
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| T |
38903924 |
aatctacaagtcttctctccacatgctcaaaccaactaagccgagtttccaccatcttttct |
38903985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 25826674 - 25826742
Alignment:
| Q |
57 |
aatctataagtcttctctccacatat-caaaccaccaaaatcgagtttccaccatcttttcttcaatag |
124 |
Q |
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|||||||| ||||||||||||||| ||||||||| || |||||||| |||||||||||| |||||| |
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| T |
25826674 |
aatctataggtcttctctccacattcgcaaaccacccaagccgagtttctaccatcttttctacaatag |
25826742 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 41779521 - 41779573
Alignment:
| Q |
66 |
gtcttctctccacat-atcaaaccaccaaaatcgagtttccaccatcttttct |
117 |
Q |
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|||||||||| |||| ||||||||||| || ||||||||||||||| |||||| |
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| T |
41779521 |
gtcttctctctacatgatcaaaccacctaagtcgagtttccaccattttttct |
41779573 |
T |
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