View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18033_low_9 (Length: 541)
Name: NF18033_low_9
Description: NF18033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18033_low_9 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 29 - 532
Target Start/End: Original strand, 25600239 - 25600742
Alignment:
| Q |
29 |
taccctccaggcataccggtattgatcccaggcgaggttattactgagaaagcagtcgattatctactccatgtaagaagtgaaggtgctgatattagtg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600239 |
taccctccaggcataccggtattgatcccaggcgaggttattactgagaaagcagtcgattatctactccatgtaagaagtgaaggtgctgatattagtg |
25600338 |
T |
|
| Q |
129 |
gagcatctgatcccttactttcttcgatagttgtctgcaatgtatagtaaacagctggtgacagttattagatataacagttaccttatgtactccttga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25600339 |
gagcatctgatcccttactttcttcgatagttgtctgcaatgtatagtaaacagctggtgacagttattatatataacagttaccttatgtactccttga |
25600438 |
T |
|
| Q |
229 |
tgtaatttatattatctcattatcaatataattttgaatttacttttctcttatcattgagttcttccaataataataataagaacgacattgaagttaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25600439 |
tgtaatttatattatctcattatcaatataattttgaatttacttttctcttatcattgacttcttccaataataataataagaacgacattgaagttaa |
25600538 |
T |
|
| Q |
329 |
gtaacaaggacaatacgtttgaatgcgtgttcactatttgacacatgtaagtgtcatatcaattggattacttctattttctcaaatcattactgttttc |
428 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600539 |
gtaacaaggacaatacgattgaatgtgtgttcactatttgacacatgtaagtgtcatatcaattggattacttctattttctcaaatcattactgttttc |
25600638 |
T |
|
| Q |
429 |
tacgtgtccctgtcagtgtcaatgttgtgattggtttcgtgtctatatctgtgtttcatagccttgaagtttaaacttctcaaatgcccttctttagcct |
528 |
Q |
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| T |
25600639 |
tacgtgtccctgtcagtgtcaatgttgtgattggtttcgtgtctatatctgtgtttcatagccttgaagtttaaacttctcaaatgcccttctttagcct |
25600738 |
T |
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| Q |
529 |
ttgc |
532 |
Q |
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|||| |
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| T |
25600739 |
ttgc |
25600742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25590577 - 25590756
Alignment:
| Q |
19 |
tatatgcccttaccctccaggcataccggtattgatcccaggcgaggttattactgagaaagcagtcgattatctactccatgtaagaagtgaaggtgct |
118 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25590577 |
tatatgtccataccctccaggcataccggtattgatcccaggcgaggttattactgagaaagcagtcgattatctactccatgtaagaagtgaaggtgct |
25590676 |
T |
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| Q |
119 |
gatattagtggagcatctgatcccttactttcttcgatagttgtctgcaatgtatagtaaacagctggtgacagttatta |
198 |
Q |
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| T |
25590677 |
gatattagtggagcatctgatcccttactttcctcgatagttgtctgcaatgtatagtaaacagctggtgacagttatta |
25590756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 25585707 - 25585847
Alignment:
| Q |
32 |
cctccaggcataccggtattgatcccaggcgaggttattactgagaaagcagtcgattatctactccatgtaagaagtgaaggtgctgatattagtggag |
131 |
Q |
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|||||||||||||| |||||||| || || |||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25585707 |
cctccaggcatacctgtattgattcccggtgaggttattactgagagagccgtcaattatctactccatgtaagaagcaaaggtgctgatattagtggag |
25585806 |
T |
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| Q |
132 |
catctgatcccttactttcttcgatagttgtctgcaatgta |
172 |
Q |
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| T |
25585807 |
catctgatcccttactttcttctatagttgtctgcaatgta |
25585847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 25590839 - 25590872
Alignment:
| Q |
211 |
accttatgtactccttgatgtaatttatattatc |
244 |
Q |
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| T |
25590839 |
accttatgtactccttgatgtagtttatattatc |
25590872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 10218 - 10266
Alignment:
| Q |
212 |
ccttatgtactccttgatgtaatttatattatctcattatcaatataat |
260 |
Q |
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||||||||| |||| ||||||||||||||||||||| || |||||||| |
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| T |
10218 |
ccttatgtatgccttcatgtaatttatattatctcataattaatataat |
10266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 26499095 - 26499159
Alignment:
| Q |
216 |
atgtactccttgatgtaatttatattatctcattatcaatataattttgaatttacttttctcttatc |
283 |
Q |
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| T |
26499095 |
atgtaccccttgatgtaattcat--tatttcataatcaatataattttca-tttacttttctcttatc |
26499159 |
T |
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