View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18034_high_1 (Length: 662)
Name: NF18034_high_1
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_high_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Complemental strand, 49272181 - 49271548
Alignment:
| Q |
18 |
actttagggtaaataacattggaaaagagggataccaaagcatctttagtgctcacaaatttaggtatcaaattggacttgacgaagaaactcatctgat |
117 |
Q |
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| T |
49272181 |
actttagggtaaataacattggaaaagagggataccaaagcatctttagtgctcacaaatttaggtatcaaattggacttgacgaagaaactcatctgat |
49272082 |
T |
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| Q |
118 |
ggacatgaaacaattgagagaccatttatctattttaaaaaattcagagacaaagttaactgatggacacaaattcaaaggcaaagtaccatattcactt |
217 |
Q |
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| T |
49272081 |
ggacatgaaacaattgagagaccatttatctattttaaaaaattcagagacaaagttaactgatggacacaaattcaaaggcaaagtaccatattcactt |
49271982 |
T |
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| Q |
218 |
gaaaatgaattttccttgacaaatggaggacatgactatataatgctttggaagagacataagtttcaatcttggtaaagggaagttcaacaagaaagtt |
317 |
Q |
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| T |
49271981 |
gaaaatgaattttccttgacaaatggaggacatgactatataatgctttggaagagacataagtttcaatcttggttaagggaagttcaacaagaaagtt |
49271882 |
T |
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| Q |
318 |
tagaatgagaagacggttgtgccagaggtttaaaaaagttaaatttatttccataaaatctaaaacttatgtcatataggtcacactttatttatcgaga |
417 |
Q |
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| T |
49271881 |
tagaatgagaagacggttgtgccagaggtttaaaaaagttaaatttatttccataaaatctaaaacttatgtcatataggtcacactttatttatcgaga |
49271782 |
T |
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| Q |
418 |
gccattattcttcnnnnnnnggtgagccgagagtcgttcagtagttgataagactctcgacaaatagaattgaccaacaggacataaattttactttcat |
517 |
Q |
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| T |
49271781 |
gccattattcttctttttttggtgagccgagagtcgttcagtagttgataagactctcgacaaatagagttgaccaacaggacataa-----------at |
49271693 |
T |
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| Q |
518 |
ttctgaaatatatattttttaactagacataataagggaaaagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgt |
617 |
Q |
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| T |
49271692 |
ttctgaaatatatattttttaactagacataataagggaaaagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgt |
49271593 |
T |
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| Q |
618 |
ggtagaaagagcaactttacccaaatgaccaaccatcatcattga |
662 |
Q |
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| T |
49271592 |
ggtagaaagagcaagtttacccaaatgaccaaccatcatcattga |
49271548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 558 - 662
Target Start/End: Complemental strand, 49254984 - 49254880
Alignment:
| Q |
558 |
aagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaactttacccaaatgaccaaccatcatc |
657 |
Q |
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| T |
49254984 |
aagaagacttacaagaagactgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatc |
49254885 |
T |
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| Q |
658 |
attga |
662 |
Q |
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| T |
49254884 |
attga |
49254880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 564 - 662
Target Start/End: Complemental strand, 49267240 - 49267142
Alignment:
| Q |
564 |
acttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaactttacccaaatgaccaaccatcatcattga |
662 |
Q |
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| T |
49267240 |
acttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattga |
49267142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 662
Target Start/End: Original strand, 49274607 - 49274696
Alignment:
| Q |
577 |
ctgaagccagagacaccatagagagagatagca----atagctgtggtagaaagagcaactttacccaaatgaccaaccatcatcattga |
662 |
Q |
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| T |
49274607 |
ctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattga |
49274696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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