View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18034_high_10 (Length: 319)

Name: NF18034_high_10
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18034_high_10
NF18034_high_10
[»] chr1 (5 HSPs)
chr1 (9-303)||(29423531-29423825)
chr1 (20-258)||(29442945-29443186)
chr1 (9-268)||(29467398-29467656)
chr1 (6-230)||(29452959-29453183)
chr1 (194-303)||(29463530-29463639)
[»] chr2 (26 HSPs)
chr2 (22-144)||(9283922-9284044)
chr2 (20-237)||(10336115-10336335)
chr2 (7-144)||(9321237-9321374)
chr2 (20-148)||(9274789-9274917)
chr2 (7-135)||(9328857-9328985)
chr2 (37-135)||(10353412-10353510)
chr2 (24-156)||(12012266-12012398)
chr2 (28-136)||(8579227-8579335)
chr2 (20-132)||(9316302-9316414)
chr2 (26-154)||(12005840-12005968)
chr2 (11-98)||(9065370-9065457)
chr2 (20-237)||(9292205-9292419)
chr2 (28-132)||(9060879-9060983)
chr2 (9-59)||(10348054-10348104)
chr2 (28-133)||(8573242-8573347)
chr2 (180-237)||(9357617-9357674)
chr2 (181-237)||(9060774-9060830)
chr2 (182-237)||(9316464-9316519)
chr2 (9-72)||(16269349-16269412)
chr2 (180-230)||(7115285-7115335)
chr2 (181-237)||(9329034-9329090)
chr2 (187-230)||(8573145-8573188)
chr2 (187-230)||(9283836-9283879)
chr2 (186-237)||(10348231-10348282)
chr2 (180-225)||(9321410-9321455)
chr2 (212-241)||(12018511-12018540)
[»] chr8 (1 HSPs)
chr8 (20-238)||(41966361-41966579)
[»] scaffold0667 (1 HSPs)
scaffold0667 (9-237)||(4746-4974)
[»] chr4 (1 HSPs)
chr4 (37-237)||(26575164-26575364)
[»] chr3 (1 HSPs)
chr3 (103-237)||(37462855-37462989)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 29423531 - 29423825
Alignment:
Q  9 caagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423531 caagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttcca 29423630  T
Q  109 cgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggtt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29423631 cgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcagtt 29423730  T
Q  209 aatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttcagaatgttgaggggtaggaatagggagggaagggataat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423731 aatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttcagaatgttgaggggtaggaatagggagggaagggataat 29423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 29443186 - 29442945
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgttt---gagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttg 116  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||    |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29443186 gtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttg 29443087  T
Q  117 ttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggttaatggatc 216  Q
    ||||  |||||||||||||  ||||||||||| ||||||| ||||||| | | ||||| ||  ||||| ||| |||||||||||| | ||| ||||||||    
T  29443086 ttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatc 29442987  T
Q  217 aaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgtt 258  Q
    |||||||||||||| || ||||||| || |||| ||||||||    
T  29442986 aaaaccgaagccgtgaatgcaaaagccgacgtaaatgttgtt 29442945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 29467656 - 29467398
Alignment:
Q  9 caagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttcca 108  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| |||||  ||| |||| |||||||    
T  29467656 caagtttcttcttcattatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagtactttcca 29467557  T
Q  109 cgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggtt 208  Q
     ||||| |||||||||||||||||| |  ||||||| |||  |||    || ||||  | |||||||||  ||||| ||| |||||||||||||||||||    
T  29467556 ggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagagattctga-gagtttgtaatcatcggtt 29467458  T
Q  209 aatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttcagaa 268  Q
    |||||||||||||||||||||| |||||||||| || ||| |||| ||||||||| ||||    
T  29467457 aatggatcaaaaccgaagccgtgaacgcaaaagccgacgtggatggtgttaggtttagaa 29467398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 29453183 - 29452959
Alignment:
Q  6 gaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttcttt 105  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||  |||| ||| |||| |||||| ||| |||||  ||||||| |||||    
T  29453183 gaccaagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtcttt 29453084  T
Q  106 ccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcg 205  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||||||| | ||||   || |||| |||  ||||| ||||||||||||||||  ||    
T  29453083 ccacgagttcattttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacg 29452984  T
Q  206 gttaatggatcaaaaccgaagccgt 230  Q
     |||| ||||||||||| |||||||    
T  29452983 tttaacggatcaaaaccaaagccgt 29452959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 29463639 - 29463530
Alignment:
Q  194 ttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttcagaatgttgaggggtaggaatagggaggg 293  Q
    ||||||||||||||||||| |||||||  |||||| | || | ||||| ||  || ||||||||||| |||||   ||||||| |||||||||||| |      
T  29463639 ttgtaatcatcggttaatgaatcaaaatggaagccatgaatgaaaaagccgaagtggatgttgttagattcagggcgttgaggagtaggaatagggggat 29463540  T
Q  294 aagggataat 303  Q
    ||||||||||    
T  29463539 aagggataat 29463530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 9284044 - 9283922
Alignment:
Q  22 cattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttc 121  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||| |||||  |||||| |  ||||||||||||||||||     
T  9284044 cattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttg 9283945  T
Q  122 gagctgaagagtctcgcatgtga 144  Q
    |||||||||||||| ||||||||    
T  9283944 gagctgaagagtctggcatgtga 9283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 10336115 - 10336335
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 119  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||| | || |||||    ||||||  |||||| ||||||||||    
T  10336115 gtcattatccagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttt 10336214  T
Q  120 tcgagctgaagagtctcgcatgtga---ttcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggttaatggatc 216  Q
    |||||||||||||| ||  ||||||    ||| |||||   |||||||  |||||||| ||  ||||| ||||||||||||||||  ||| ||||| |||    
T  10336215 tcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcggataatgaatc 10336314  T
Q  217 aaaaccgaagccgtaaacgca 237  Q
    ||||||||| |||| ||||||    
T  10336315 aaaaccgaatccgtgaacgca 10336335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 9321237 - 9321374
Alignment:
Q  7 accaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttc 106  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||   ||||||||||  ||||| ||| |||||  | |||| |  ||||    
T  9321237 accaagtttctttgtcattatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttc 9321336  T
Q  107 cacgagtttgttttcgagctgaagagtctcgcatgtga 144  Q
    |||||||||||| | ||||||||||||||  |||||||    
T  9321337 cacgagtttgttatagagctgaagagtctgacatgtga 9321374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 9274789 - 9274917
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 119  Q
    ||||||| |||||||||||||||||||||||||| |||||| | |||| |||| | ||||| ||| |||||  | |||| |  |||||||||||||||||    
T  9274789 gtcattacccagtgaagagaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttt 9274888  T
Q  120 tcgagctgaagagtctcgcatgtgattca 148  Q
    || |||||||||||||| |||||||||||    
T  9274889 tcaagctgaagagtctcacatgtgattca 9274917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 9328857 - 9328985
Alignment:
Q  7 accaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttc 106  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||| |  |||||||||||  ||||| ||| ||||| | ||||| |  ||||    
T  9328857 accaagtttcttagtcattatccagtgaagagaattctcaaccaaaacccccgtgttttgagcatagacaagagcgtagggcatagcaggaattattttc 9328956  T
Q  107 cacgagtttgttttcgagctgaagagtct 135  Q
    || ||||||||||| ||| ||||||||||    
T  9328957 caagagtttgttttagagttgaagagtct 9328985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 10353412 - 10353510
Alignment:
Q  37 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtct 135  Q
    ||||||||||||||||||||||||||||  ||||||||||||||  |||||||   |||||| | ||||||| |||||||||||| |||||||||||||    
T  10353412 agaattctcaacaaaaacccccattgttaaagcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtct 10353510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 12012398 - 12012266
Alignment:
Q  24 ttatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcga 123  Q
    ||||||| ||||||||||||||||||||||| ||||| ||| |||||||| |||||   ||    ||  |||||||| ||||||||||||||||||||||    
T  12012398 ttatccaatgaagagaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 12012299  T
Q  124 gctgaagagtctcgcatgtgattcagaagtaga 156  Q
    | ||||||||||  ||| ||| ||| |||||||    
T  12012298 ggtgaagagtctgacatatgaatcaaaagtaga 12012266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 8579335 - 8579227
Alignment:
Q  28 ccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctg 127  Q
    |||||| |||||||||||||| ||||||||||  | |||||    |||||||| ||| || ||  |||||||| ||||||||||||||||||| ||||||    
T  8579335 ccagtggagagaattctcaacgaaaacccccacaggttgagtgctgtaaagagcgtacgggatattaggaagtgctttccacgagtttgttttggagctg 8579236  T
Q  128 aagagtctc 136  Q
    |||||||||    
T  8579235 aagagtctc 8579227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 9316302 - 9316414
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 119  Q
    ||||||| ||||||||||||||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  | |||| |  |||||||||||||||||    
T  9316302 gtcattacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttt 9316401  T
Q  120 tcgagctgaagag 132  Q
    || |||| |||||    
T  9316402 tcaagctaaagag 9316414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 12005968 - 12005840
Alignment:
Q  26 atccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagc 125  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |   ||    ||| |||||||| ||||||| ||||||||||||||      
T  12005968 atccagtgaagagaattctcaacaaaaacccccatggttagagcatagcaaataacatactcaatgctaggaagtactttccatgagtttgttttcgaag 12005869  T
Q  126 tgaagagtctcgcatgtgattcagaagta 154  Q
    ||||||| ||| ||| ||| ||| |||||    
T  12005868 tgaagagactcacatatgaatcaaaagta 12005840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 9065457 - 9065370
Alignment:
Q  11 agtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaa 98  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||  | | | |||||||||||| ||| ||||| |||||||    
T  9065457 agtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaa 9065370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 9292205 - 9292419
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 119  Q
    ||||||| |||||| | |||||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  ||||||    |||||||||||| ||||    
T  9292205 gtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttt 9292304  T
Q  120 tcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggttaatggatcaaa 219  Q
    | ||||||||||||||| | ||||  ||| |   ||| |  ||||  ||| | |  ||  ||||| ||||||||||||||||  |||||||||||||| |    
T  9292305 tggagctgaagagtctcacctgtggatcaaa---agagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcata 9292401  T
Q  220 accgaagccgtaaacgca 237  Q
    ||||||||||| ||||||    
T  9292402 accgaagccgtgaacgca 9292419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 9060983 - 9060879
Alignment:
Q  28 ccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctg 127  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  | |||| |  ||||||||||||||||||| ||||     
T  9060983 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9060884  T
Q  128 aagag 132  Q
    |||||    
T  9060883 aagag 9060879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 10348054 - 10348104
Alignment:
Q  9 caagtttctccgtcattatccagtgaagagaattctcaacaaaaaccccca 59  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  10348054 caagtttcttcgtcataatccagtgaatagaattctcaacaaaaaccccca 10348104  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 8573347 - 8573242
Alignment:
Q  28 ccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctg 127  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||| | ||||| ||| ||| |  | |||| |  ||||||||||||||||||| ||||     
T  8573347 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagcta 8573248  T
Q  128 aagagt 133  Q
    ||||||    
T  8573247 aagagt 8573242  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 9357617 - 9357674
Alignment:
Q  180 agattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
    ||||| ||||||||||||||||  ||||||| ||||||||||||||||||| ||||||    
T  9357617 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 9357674  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 9060830 - 9060774
Alignment:
Q  181 gattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
    |||| ||||||||||||||||  |||| |||||||||||||||||||||| ||||||    
T  9060830 gattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgca 9060774  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 9316464 - 9316519
Alignment:
Q  182 attgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
    ||| ||||||||||||||||| | ||| ||||||||||||||||||||| ||||||    
T  9316464 attctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgca 9316519  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 16269349 - 16269412
Alignment:
Q  9 caagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcata 72  Q
    ||||||||| || |||||| ||| ||| ||||||||||||||||||||||||  ||||||||||    
T  16269349 caagtttcttcgccattatacagcgaatagaattctcaacaaaaacccccatgatttgagcata 16269412  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 7115335 - 7115285
Alignment:
Q  180 agattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgt 230  Q
    ||||| |||| |||||||||||||| ||||| |||||||||||||||||||    
T  7115335 agattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgt 7115285  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 9329034 - 9329090
Alignment:
Q  181 gattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
    |||| ||||||||||||||||| ||| ||| |||||||||||||| |||| ||||||    
T  9329034 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 9329090  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 8573188 - 8573145
Alignment:
Q  187 gaggagtttgtaatcatcggttaatggatcaaaaccgaagccgt 230  Q
    |||||||||||||||  |||||||| ||||||||||||||||||    
T  8573188 gaggagtttgtaatcggcggttaatagatcaaaaccgaagccgt 8573145  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 9283879 - 9283836
Alignment:
Q  187 gaggagtttgtaatcatcggttaatggatcaaaaccgaagccgt 230  Q
    |||||||||||||||  ||||||| |||||||||||||||||||    
T  9283879 gaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgt 9283836  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 10348231 - 10348282
Alignment:
Q  186 tgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
    ||||||||||||||||| ||| || | |||||||||||||||||| ||||||    
T  10348231 tgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgca 10348282  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 9321410 - 9321455
Alignment:
Q  180 agattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaa 225  Q
    ||||| ||||||||||||||||  ||||||| ||||||||||||||    
T  9321410 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaa 9321455  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 12018540 - 12018511
Alignment:
Q  212 ggatcaaaaccgaagccgtaaacgcaaaag 241  Q
    ||||||||||||||||||||||||||||||    
T  12018540 ggatcaaaaccgaagccgtaaacgcaaaag 12018511  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 41966579 - 41966361
Alignment:
Q  20 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 119  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||  || |||||  | |||| |  ||||||||||||  |||    
T  41966579 gtcattatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttt 41966480  T
Q  120 tcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggttaatggatcaaa 219  Q
    | ||||| || || ||  ||||||| ||| |||||||  |||||   || |   | ||  ||||| |||||||||||| |||   |||||||||||||||    
T  41966479 tagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcgctggttaatggatcaaa 41966380  T
Q  220 accgaagccgtaaacgcaa 238  Q
    |||||| |||| |||||||    
T  41966379 accgaatccgtgaacgcaa 41966361  T

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Target: scaffold0667 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 4746 - 4974
Alignment:
Q  9 caagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttcca 108  Q
    |||||||||  | |||||||||||||| ||||| |||||| ||||||||||| ||||||||| ||  ||| | ||| ||||| ||||||| |  ||||||    
T  4746 caagtttctttgccattatccagtgaatagaatcctcaaccaaaacccccatggtttgagcaaagacaagggcgtacggcatagtaggaattattttcca 4845  T
Q  109 cgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggtt 208  Q
    |||||| |||||| |||| ||||||||  ||||||  ||| ||  ||  | |||||    ||| || ||  ||| | |||||| |||||||||  |||||    
T  4846 cgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatcgccggtt 4945  T
Q  209 aatggatcaaaaccgaagccgtaaacgca 237  Q
    || ||||||||||||||||||| ||||||    
T  4946 aaaggatcaaaaccgaagccgtgaacgca 4974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 26575164 - 26575364
Alignment:
Q  37 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 136  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| |||||| |   |||||| |  |||||| |||||||||||| |||||||||||||     
T  26575164 agaattctcaacaaaaacacccattgttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtcta 26575263  T
Q  137 gcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcggttaatggatcaaaaccgaagccgtaaacgc 236  Q
     ||||||  ||| ||  ||  | |||||  ||||  ||  |  ||||| ||||||||||||||||  ||| ||| | ||||||||||||||||| |||||    
T  26575264 acatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgc 26575363  T
Q  237 a 237  Q
    |    
T  26575364 a 26575364  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 37462855 - 37462989
Alignment:
Q  103 tttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||  ||| ||  ||  | |||||  ||||  |  ||  ||||| ||||||||||||||||     
T  37462855 tttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggagtttgtaatcg 37462954  T
Q  203 tcggttaatggatcaaaaccgaagccgtaaacgca 237  Q
     ||||||| | ||||||||||||||||| ||||||    
T  37462955 ccggttaaagaatcaaaaccgaagccgtgaacgca 37462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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