View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18034_high_11 (Length: 291)
Name: NF18034_high_11
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 38484473 - 38484211
Alignment:
| Q |
13 |
aaaatagagaaatggtagttaaatttgaagttgtcatcatataatggaaatagaatatttagagggaccgaaaatcaaagaaaattcttagagaaactaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38484473 |
aaaatagagaaatggtagttaaatttgaagttgtcatcatataatggaaatagaatatttagagggaccgaaaatcaaagaaaattcttagaggaactaa |
38484374 |
T |
|
| Q |
113 |
aacagaaattcggtttatttaaaggaacttaaaacatatttaacgattaaaaagacatccctaagctacagccattgatgatgcatcacagtacaaactt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484373 |
aacagaaattcggtttatttaaaggaacttaaaacatatttaacgattaaaaagacatccctaagctacagccattgatgatgcatcacagtacaaactt |
38484274 |
T |
|
| Q |
213 |
tcttggttcaccctttgcatcttgtgtgtgtgttccattccatgatgaacaagctcatctgtt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484273 |
tcttggttcaccctttgcatcttgtgtgtgtgttccattccatgatgaacaagctcatctgtt |
38484211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 40360748 - 40360803
Alignment:
| Q |
100 |
ttagagaaactaaaacagaaattcggtttatttaaaggaacttaaaacatatttaac |
156 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||| |||||| |||||||||||||| |
|
|
| T |
40360748 |
ttagagaaactaaaacaaaaatt-ggtatatttataggaaccaaaaacatatttaac |
40360803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University