View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18034_high_13 (Length: 268)
Name: NF18034_high_13
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 36452905 - 36452660
Alignment:
| Q |
18 |
gttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggttttccttattccaatgacttt |
117 |
Q |
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| T |
36452905 |
gttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacaccatggttttccttattccaatgacttt |
36452806 |
T |
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| Q |
118 |
gttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctctcttgt |
217 |
Q |
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| T |
36452805 |
gttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctatcttgt |
36452706 |
T |
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| Q |
218 |
cttggtgaaaagaaaaaccattgttccgtgtctccacgacatctct |
263 |
Q |
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| T |
36452705 |
cttggtgaaaagaaaaaccattgttccgtgtctccacgacatctct |
36452660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 19087191 - 19087412
Alignment:
| Q |
19 |
ttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggttttccttattccaatgactttg |
118 |
Q |
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| T |
19087191 |
ttgaatggctctgtattcattcatcttccattttgttttccttccacttggagcttttcctttatagaaaaccatggttttcttcaccccaataactttg |
19087290 |
T |
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| Q |
119 |
ttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctctcttgtc |
218 |
Q |
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| T |
19087291 |
ttatctgaagaataaacataaccaggagaacctgttgccttccagtatccacaagcagtagttctattaggtctccctccccttgcttctctctcttgac |
19087390 |
T |
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| Q |
219 |
ttggtgaaaagaaaaaccattg |
240 |
Q |
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| T |
19087391 |
ctggtgaaaagaaaaaccattg |
19087412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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