View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18034_high_14 (Length: 262)

Name: NF18034_high_14
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18034_high_14
NF18034_high_14
[»] chr2 (33 HSPs)
chr2 (173-241)||(4764072-4764140)
chr2 (13-75)||(5881794-5881856)
chr2 (18-75)||(4763901-4763958)
chr2 (18-75)||(7006814-7006871)
chr2 (18-75)||(18494157-18494214)
chr2 (18-75)||(19500791-19500848)
chr2 (18-75)||(33709108-33709165)
chr2 (18-75)||(41465771-41465828)
chr2 (18-75)||(41961110-41961167)
chr2 (18-73)||(2325256-2325311)
chr2 (18-75)||(11366256-11366314)
chr2 (13-75)||(19289199-19289261)
chr2 (29-75)||(26357858-26357904)
chr2 (18-75)||(3177209-3177266)
chr2 (18-75)||(27349824-27349881)
chr2 (19-75)||(19424518-19424574)
chr2 (28-75)||(4478645-4478692)
chr2 (32-75)||(35959176-35959219)
chr2 (24-75)||(37905986-37906037)
chr2 (13-75)||(4263952-4264014)
chr2 (29-75)||(19314128-19314174)
chr2 (18-75)||(13711729-13711786)
chr2 (18-75)||(31570610-31570667)
chr2 (18-75)||(33660253-33660310)
chr2 (18-75)||(43648121-43648178)
chr2 (27-75)||(4167201-4167249)
chr2 (18-70)||(39167250-39167302)
chr2 (18-73)||(33550865-33550920)
chr2 (18-53)||(44913934-44913969)
chr2 (18-53)||(45327990-45328025)
chr2 (13-75)||(31862117-31862179)
chr2 (29-75)||(43770724-43770770)
chr2 (18-75)||(44286219-44286276)
[»] chr8 (36 HSPs)
chr8 (13-75)||(43643459-43643521)
chr8 (18-75)||(33906481-33906538)
chr8 (18-75)||(38644247-38644304)
chr8 (13-75)||(6098377-6098439)
chr8 (13-75)||(23854295-23854357)
chr8 (18-75)||(1149496-1149553)
chr8 (18-75)||(4132550-4132607)
chr8 (18-75)||(5299810-5299867)
chr8 (18-75)||(16223132-16223189)
chr8 (18-75)||(16446739-16446796)
chr8 (18-71)||(24823262-24823315)
chr8 (18-70)||(40862688-40862740)
chr8 (18-68)||(27082709-27082759)
chr8 (13-75)||(37970383-37970445)
chr8 (18-75)||(1149784-1149841)
chr8 (18-75)||(1205196-1205253)
chr8 (18-75)||(7890821-7890878)
chr8 (18-75)||(11727293-11727350)
chr8 (18-75)||(34895231-34895288)
chr8 (18-75)||(39098983-39099040)
chr8 (18-75)||(8803680-8803738)
chr8 (18-75)||(466101-466158)
chr8 (18-75)||(12587851-12587908)
chr8 (18-75)||(12876379-12876436)
chr8 (18-75)||(18259348-18259405)
chr8 (18-75)||(33198071-33198128)
chr8 (18-75)||(36694830-36694887)
chr8 (13-75)||(35459575-35459637)
chr8 (29-75)||(44869777-44869823)
chr8 (18-75)||(1953852-1953909)
chr8 (13-66)||(10555077-10555130)
chr8 (18-75)||(34951921-34951978)
chr8 (18-75)||(35859203-35859260)
chr8 (18-68)||(9864417-9864467)
chr8 (18-56)||(30654466-30654504)
chr8 (142-170)||(16446640-16446668)
[»] chr5 (49 HSPs)
chr5 (13-75)||(22973930-22973992)
chr5 (13-75)||(24886352-24886414)
chr5 (18-75)||(5830162-5830219)
chr5 (18-75)||(35826334-35826391)
chr5 (18-75)||(39573081-39573138)
chr5 (13-75)||(27330569-27330631)
chr5 (18-75)||(1429010-1429067)
chr5 (18-75)||(31705460-31705517)
chr5 (18-75)||(38528085-38528142)
chr5 (13-72)||(12910620-12910679)
chr5 (18-73)||(35504635-35504690)
chr5 (13-75)||(35934161-35934223)
chr5 (13-75)||(43308508-43308570)
chr5 (18-75)||(2888293-2888350)
chr5 (18-75)||(13956210-13956267)
chr5 (18-75)||(15992388-15992445)
chr5 (18-75)||(22255452-22255509)
chr5 (18-75)||(25669846-25669903)
chr5 (18-75)||(33908503-33908559)
chr5 (18-75)||(35511330-35511387)
chr5 (18-73)||(699420-699475)
chr5 (13-75)||(25889635-25889697)
chr5 (18-75)||(5837825-5837882)
chr5 (18-75)||(7208712-7208769)
chr5 (18-75)||(8437235-8437292)
chr5 (18-75)||(8741733-8741790)
chr5 (18-75)||(14409189-14409246)
chr5 (18-75)||(17157879-17157936)
chr5 (18-75)||(22981063-22981120)
chr5 (18-75)||(28416399-28416456)
chr5 (18-71)||(31786498-31786551)
chr5 (18-75)||(42342991-42343048)
chr5 (27-75)||(8467005-8467053)
chr5 (29-75)||(9200505-9200551)
chr5 (18-71)||(7693491-7693544)
chr5 (30-75)||(19120141-19120186)
chr5 (18-75)||(22019893-22019950)
chr5 (18-75)||(25500774-25500831)
chr5 (18-75)||(32563410-32563467)
chr5 (27-75)||(36860703-36860751)
chr5 (27-75)||(40133664-40133712)
chr5 (18-75)||(15724758-15724815)
chr5 (18-55)||(23116090-23116127)
chr5 (23-75)||(6824329-6824381)
chr5 (27-75)||(21088614-21088662)
chr5 (27-75)||(36867041-36867089)
chr5 (142-171)||(14409089-14409118)
chr5 (142-171)||(35511230-35511259)
chr5 (142-170)||(38527986-38528014)
[»] chr4 (48 HSPs)
chr4 (13-75)||(17272229-17272291)
chr4 (13-75)||(25184378-25184440)
chr4 (18-75)||(19440532-19440589)
chr4 (18-75)||(35025450-35025507)
chr4 (13-75)||(29584084-29584146)
chr4 (18-75)||(19089337-19089394)
chr4 (18-75)||(32579716-32579773)
chr4 (18-75)||(33341668-33341725)
chr4 (18-75)||(37663625-37663682)
chr4 (18-75)||(37775928-37775985)
chr4 (18-75)||(50764990-50765047)
chr4 (20-75)||(9139501-9139556)
chr4 (13-75)||(879432-879494)
chr4 (18-72)||(37287998-37288052)
chr4 (13-75)||(47254005-47254067)
chr4 (18-75)||(4205254-4205311)
chr4 (18-75)||(28002870-28002927)
chr4 (18-75)||(30002525-30002582)
chr4 (18-75)||(33816400-33816457)
chr4 (18-75)||(55477775-55477832)
chr4 (19-75)||(23431826-23431882)
chr4 (18-74)||(34947980-34948036)
chr4 (18-73)||(3042889-3042944)
chr4 (18-75)||(32912463-32912521)
chr4 (18-75)||(7152088-7152145)
chr4 (18-75)||(7703779-7703836)
chr4 (18-75)||(17167983-17168040)
chr4 (18-75)||(17173560-17173617)
chr4 (18-75)||(46888042-46888099)
chr4 (18-75)||(49376237-49376294)
chr4 (18-75)||(50697512-50697569)
chr4 (18-75)||(55240989-55241046)
chr4 (27-75)||(6864314-6864362)
chr4 (13-75)||(5047850-5047912)
chr4 (29-75)||(23761352-23761398)
chr4 (29-75)||(27396897-27396943)
chr4 (18-75)||(34361375-34361433)
chr4 (18-75)||(1815571-1815628)
chr4 (18-74)||(32592354-32592410)
chr4 (13-63)||(38012119-38012169)
chr4 (29-75)||(39400289-39400335)
chr4 (26-75)||(46883998-46884045)
chr4 (18-75)||(4598252-4598309)
chr4 (18-75)||(36493573-36493630)
chr4 (27-63)||(42200009-42200045)
chr4 (142-173)||(34361273-34361304)
chr4 (18-69)||(35020925-35020976)
chr4 (18-52)||(56050200-56050234)
[»] scaffold0291 (2 HSPs)
scaffold0291 (18-75)||(8157-8214)
scaffold0291 (143-171)||(8286-8314)
[»] scaffold0002 (3 HSPs)
scaffold0002 (18-75)||(408287-408344)
scaffold0002 (18-75)||(93958-94015)
scaffold0002 (32-75)||(412-455)
[»] chr7 (47 HSPs)
chr7 (18-75)||(37110119-37110176)
chr7 (13-75)||(18797567-18797629)
chr7 (18-75)||(5657340-5657397)
chr7 (18-75)||(17842443-17842500)
chr7 (18-75)||(22687476-22687533)
chr7 (18-75)||(27283989-27284046)
chr7 (18-75)||(30055772-30055829)
chr7 (18-75)||(31578923-31578980)
chr7 (18-75)||(33688121-33688178)
chr7 (18-75)||(48928156-48928213)
chr7 (16-75)||(15672618-15672677)
chr7 (18-75)||(9355685-9355742)
chr7 (18-75)||(12390508-12390565)
chr7 (18-75)||(26587951-26588008)
chr7 (18-75)||(29173767-29173824)
chr7 (18-75)||(32820912-32820969)
chr7 (18-75)||(35353353-35353410)
chr7 (18-75)||(46480988-46481045)
chr7 (13-75)||(7335033-7335095)
chr7 (18-75)||(8861530-8861587)
chr7 (18-75)||(11071448-11071505)
chr7 (18-75)||(12165988-12166045)
chr7 (18-75)||(31520600-31520657)
chr7 (18-75)||(32432697-32432754)
chr7 (18-75)||(37703357-37703414)
chr7 (18-75)||(37704427-37704484)
chr7 (18-75)||(41764937-41764994)
chr7 (28-74)||(10481860-10481906)
chr7 (18-75)||(24211986-24212044)
chr7 (18-75)||(6546764-6546821)
chr7 (18-75)||(15612618-15612675)
chr7 (18-75)||(23111437-23111494)
chr7 (18-75)||(37347266-37347323)
chr7 (27-72)||(44411402-44411447)
chr7 (20-75)||(10359073-10359128)
chr7 (24-75)||(25691403-25691454)
chr7 (32-75)||(43925354-43925397)
chr7 (18-75)||(32593065-32593122)
chr7 (18-75)||(34362037-34362094)
chr7 (27-75)||(4583173-4583221)
chr7 (18-75)||(44598911-44598966)
chr7 (18-75)||(21991881-21991933)
chr7 (18-75)||(26980551-26980608)
chr7 (18-47)||(27421252-27421281)
chr7 (143-171)||(30055901-30055929)
chr7 (13-53)||(38053701-38053741)
chr7 (27-55)||(43686294-43686322)
[»] chr3 (49 HSPs)
chr3 (18-75)||(4015720-4015777)
chr3 (18-75)||(22622576-22622633)
chr3 (18-75)||(26941118-26941175)
chr3 (13-75)||(22451224-22451286)
chr3 (13-75)||(51212629-51212691)
chr3 (18-75)||(11357239-11357296)
chr3 (18-75)||(42505933-42505990)
chr3 (18-75)||(54828559-54828616)
chr3 (18-73)||(40552119-40552174)
chr3 (13-75)||(46994519-46994581)
chr3 (18-75)||(33378643-33378700)
chr3 (18-75)||(46297620-46297677)
chr3 (18-68)||(34133196-34133246)
chr3 (18-75)||(2008193-2008250)
chr3 (18-75)||(7327340-7327397)
chr3 (18-75)||(29099607-29099664)
chr3 (18-75)||(29164070-29164127)
chr3 (18-75)||(32373731-32373788)
chr3 (18-75)||(37157969-37158026)
chr3 (18-75)||(40936234-40936291)
chr3 (18-75)||(43975750-43975807)
chr3 (18-75)||(50475072-50475129)
chr3 (18-75)||(52040780-52040837)
chr3 (18-75)||(53229010-53229067)
chr3 (28-72)||(45174777-45174821)
chr3 (18-75)||(21009659-21009717)
chr3 (18-75)||(47481783-47481841)
chr3 (13-75)||(48355197-48355259)
chr3 (18-75)||(1089955-1090011)
chr3 (18-75)||(24707973-24708030)
chr3 (18-75)||(33698414-33698471)
chr3 (18-75)||(44186375-44186432)
chr3 (28-75)||(14586538-14586585)
chr3 (18-72)||(11835494-11835548)
chr3 (29-75)||(36012411-36012457)
chr3 (13-75)||(39282908-39282970)
chr3 (30-75)||(3362528-3362573)
chr3 (18-75)||(22445923-22445980)
chr3 (18-75)||(37203329-37203386)
chr3 (30-75)||(44891770-44891815)
chr3 (24-73)||(3655060-3655111)
chr3 (28-75)||(24488820-24488867)
chr3 (36-75)||(25580018-25580057)
chr3 (29-75)||(54506079-54506126)
chr3 (13-75)||(4761506-4761568)
chr3 (28-70)||(53811597-53811639)
chr3 (28-73)||(21193878-21193923)
chr3 (142-171)||(37203457-37203486)
chr3 (142-170)||(37158097-37158125)
[»] chr1 (50 HSPs)
chr1 (18-75)||(11742221-11742278)
chr1 (18-75)||(14758298-14758355)
chr1 (18-75)||(27532834-27532891)
chr1 (18-75)||(51129125-51129182)
chr1 (18-75)||(1547537-1547594)
chr1 (18-75)||(16415912-16415969)
chr1 (18-75)||(25160898-25160955)
chr1 (18-75)||(40885079-40885136)
chr1 (18-73)||(30254689-30254744)
chr1 (18-75)||(19899621-19899679)
chr1 (18-75)||(2960014-2960071)
chr1 (18-75)||(3535189-3535246)
chr1 (18-75)||(8222394-8222450)
chr1 (18-75)||(15168362-15168419)
chr1 (18-75)||(27227338-27227395)
chr1 (18-75)||(28564636-28564693)
chr1 (18-75)||(30326805-30326862)
chr1 (18-73)||(15383199-15383254)
chr1 (24-75)||(18422923-18422974)
chr1 (13-75)||(10922988-10923050)
chr1 (18-75)||(23999613-23999671)
chr1 (18-72)||(32267300-32267354)
chr1 (18-72)||(37618757-37618811)
chr1 (18-75)||(3309419-3309476)
chr1 (18-75)||(4330547-4330604)
chr1 (18-75)||(27563758-27563815)
chr1 (18-75)||(28769919-28769976)
chr1 (18-75)||(34012235-34012292)
chr1 (18-75)||(37451551-37451608)
chr1 (18-75)||(47682347-47682404)
chr1 (27-75)||(238366-238414)
chr1 (27-75)||(32216330-32216378)
chr1 (18-73)||(27267055-27267110)
chr1 (13-75)||(41926418-41926479)
chr1 (18-75)||(46931675-46931733)
chr1 (13-75)||(47279450-47279512)
chr1 (18-75)||(7078916-7078973)
chr1 (18-75)||(9902907-9902964)
chr1 (27-72)||(10181863-10181908)
chr1 (18-75)||(31621402-31621459)
chr1 (18-75)||(38823480-38823537)
chr1 (18-75)||(39393650-39393707)
chr1 (18-75)||(42721302-42721359)
chr1 (18-75)||(48353808-48353865)
chr1 (29-75)||(21289877-21289923)
chr1 (18-75)||(1359788-1359845)
chr1 (18-75)||(15752295-15752352)
chr1 (18-75)||(27763163-27763221)
chr1 (26-75)||(31962890-31962939)
chr1 (27-75)||(22170986-22171034)
[»] scaffold0318 (1 HSPs)
scaffold0318 (18-75)||(12179-12236)
[»] chr6 (15 HSPs)
chr6 (18-75)||(3879796-3879853)
chr6 (18-75)||(6091039-6091096)
chr6 (18-75)||(7234892-7234949)
chr6 (18-75)||(20768352-20768409)
chr6 (18-75)||(33619100-33619157)
chr6 (13-75)||(33892869-33892931)
chr6 (18-75)||(5627661-5627719)
chr6 (30-75)||(4318679-4318724)
chr6 (18-75)||(1946104-1946162)
chr6 (18-75)||(6089173-6089230)
chr6 (18-75)||(8513498-8513555)
chr6 (18-67)||(29182434-29182483)
chr6 (36-75)||(21016975-21017014)
chr6 (18-75)||(7054629-7054687)
chr6 (142-170)||(5627790-5627818)
[»] scaffold0061 (1 HSPs)
scaffold0061 (18-75)||(44226-44283)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-75)||(154504-154561)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-65)||(267555-267602)
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-56)||(100993-101023)
[»] scaffold0022 (2 HSPs)
scaffold0022 (143-172)||(145772-145801)
scaffold0022 (27-56)||(145893-145922)


Alignment Details
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 4764072 - 4764140
Alignment:
Q  173 agaacaattgagacatgtcaaatgatctaaaaggaaacaaaataaagttcaattacggactatacgtgt 241  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4764072 agaacaagtgagacatgtcaaatgatctaaaaggaaacaaaataaagttcaattacggattatacgtgt 4764140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 5881794 - 5881856
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  5881794 aataaaatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 5881856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4763901 - 4763958
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4763901 aatagtacctgtaagtccaagatattgcaagcattactagttgaattactattgatca 4763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7006871 - 7006814
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7006871 aatagtacttgtaagtccaagatgttgcaagcattactagatgaatttctattgatca 7006814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 18494214 - 18494157
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  18494214 aatagtacatgtaagtccaagatgttgtaagcattactagatgaattgctattgatca 18494157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 19500848 - 19500791
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  19500848 aatagtacatgtaatttcaagatgttgcaagcattactagatgaattactattgatca 19500791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33709165 - 33709108
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  33709165 aatagtacttgtaaatccaagatgttgcaagcattactagatgaattactattgatca 33709108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 41465771 - 41465828
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  41465771 aatagtacatgtaagtccaagatgttgcaaacattactatatgaattactattgatca 41465828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 41961110 - 41961167
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41961110 aataatacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 41961167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 2325311 - 2325256
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2325311 aatagtacctgtaaatccaagatgttgcaagcattactagatgaattactattgat 2325256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 11366314 - 11366256
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  11366314 aatagtacctgtaagtccaagatgttgcaagcattactagatgaatatactattgatca 11366256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 19289261 - 19289199
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19289261 aataaaataatacctgtaagtccaagatattgcaagcattactagatgaattactattgatca 19289199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 26357858 - 26357904
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26357858 taagtccaagatgttgcaagcattactagatgaattactattgatca 26357904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 3177209 - 3177266
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||||||||| ||||    
T  3177209 aatagtacatgtaagtccaagatattacaagcattactagatgaattactatttatca 3177266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27349881 - 27349824
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  27349881 aatagtatctgtaagtctaagatgttgcaagcattactagatgaattactattgatca 27349824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 19424574 - 19424518
Alignment:
Q  19 atagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  19424574 atagtacctgcaagtctaagatgttgcaagcattactagatgaattactattgatca 19424518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 4478645 - 4478692
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  4478645 gtaagtccaagatgttgcaagcattactagatgaattgctattgatca 4478692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 35959176 - 35959219
Alignment:
Q  32 gtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  35959176 gtccaagatgttgcaagcattactagatgaattactattgatca 35959219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 37905986 - 37906037
Alignment:
Q  24 acatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  37905986 acatgtaagtccaagatgttgcaagaattactggatgaattactattgatca 37906037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 4264014 - 4263952
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||| |||| || |||||||||    
T  4264014 aataaaatagtacatataagttcaagatgttgcaagcattactagatgaaataatattgatca 4263952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 19314128 - 19314174
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  19314128 taagtctaagatgttgcaagcattactagatgaattactattgatca 19314174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 13711729 - 13711786
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||| || |||||| |||||||||||||||||    
T  13711729 aatagtacctgtaagtctaagatgttgcaaacaatactagatgaattactattgatca 13711786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31570667 - 31570610
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||  ||||||||||||||||| |||| |||||||||||||||||    
T  31570667 aatagtacttgtaagtttaagatgttgcaagcattgctagatgaattactattgatca 31570610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33660310 - 33660253
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||  ||||||||||||||||||||| |||||||||||||||||    
T  33660310 aatagtatctgtaagtctgagatgttgcaagcattactagatgaattactattgatca 33660253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 43648178 - 43648121
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| || |||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  43648178 aatagcacttgtaagtccaagatgtcgcaaacattactagatgaattactattgatca 43648121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4167201 - 4167249
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  4167201 tgtaagtccaagatgttgcaagcattactggatgaattactattaatca 4167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 39167302 - 39167250
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactatt 70  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  39167302 aatagtacatgtaagtccaaattgttgctagcattactagatgaattactatt 39167250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 33550920 - 33550865
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||| || |||||||| ||||||||||||||||||| ||||| |||||||||    
T  33550920 aatagtacttgaaagtccaatatgttgcaagcattactagatgaataactattgat 33550865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 44913934 - 44913969
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcatta 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  44913934 aatagtacatgtaagtccaagatgttgcaagcatta 44913969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 45327990 - 45328025
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcatta 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  45327990 aatagtacatgtaagtccaagatgttgcaagcatta 45328025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 31862117 - 31862179
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| |||||||||||||| ||| |  ||||||||| |||||||||||||||||    
T  31862117 aataaaatagtacttgtaagtccaagatattgtagacattactagatgaattactattgatca 31862179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 43770770 - 43770724
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  43770770 taagttcaagatgttgcaagcattactagatgaatttctattgatca 43770724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44286219 - 44286276
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||| |||||||||||||||||  ||| |||||||||||||||||    
T  44286219 aatagtatctgtaagtctaagatgttgcaagcattgttagatgaattactattgatca 44286276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 43643521 - 43643459
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43643521 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 43643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33906481 - 33906538
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33906481 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 33906538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38644247 - 38644304
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38644247 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 38644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6098439 - 6098377
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6098439 aatacaatagtacttgtaagtccaagatgttgcaagcattactagatgaattactattgatca 6098377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23854357 - 23854295
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23854357 aataaaatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 23854295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1149553 - 1149496
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1149553 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 1149496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 4132607 - 4132550
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4132607 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 4132550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 5299867 - 5299810
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  5299867 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattaatca 5299810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16223132 - 16223189
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  16223132 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 16223189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 16446796 - 16446739
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16446796 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 16446739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 24823315 - 24823262
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattg 71  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24823315 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattg 24823262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 40862688 - 40862740
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactatt 70  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40862688 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactatt 40862740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 27082759 - 27082709
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattacta 68  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27082759 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattacta 27082709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 37970445 - 37970383
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  37970445 aataaaatagtacctgtaagtccaagatgttgcaagcattactagatgaattactgttgatca 37970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1149841 - 1149784
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  1149841 aatagtacttgtaagtctaagatgttgcaagcattactagatgaattactattgatca 1149784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1205196 - 1205253
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1205196 aatagtacctgtaagtccaagatgttgcaagtattactagatgaattactattgatca 1205253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7890878 - 7890821
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  7890878 aatagtacatgtaagtctaaaatgttgcaagcattactagatgaattactattgatca 7890821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 11727293 - 11727350
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  11727293 aatagtatatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 11727350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34895231 - 34895288
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  34895231 aatagtacatgtaagttcaagatgttgcaagcattactatatgaattactattgatca 34895288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 39099040 - 39098983
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  39099040 aatagtatatgtaagtccaaaatgttgcaagcattactagatgaattactattgatca 39098983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 8803738 - 8803680
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  8803738 aatagtacatgtaagtccaagatgttgcaagcattaccagatgaatatactattgatca 8803680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 466101 - 466158
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  466101 aataatacctgtaagtctaagatgttgcaagcattactagatgaattactattgatca 466158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12587851 - 12587908
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  12587851 aatagtacctgtaagtcaaagattttgcaagcattactagatgaattactattgatca 12587908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12876379 - 12876436
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||    
T  12876379 aatagtacatgtaagtccaagatgttacaggcattactagatgaattactatttatca 12876436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 18259348 - 18259405
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||    
T  18259348 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattattgttgatca 18259405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33198071 - 33198128
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||    
T  33198071 aatagtacatgtaagtctaaaatgttgcaagcatcactagatgaattactattgatca 33198128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 36694887 - 36694830
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||    
T  36694887 aatagtacatgtaaatccaagatgttgcaagcatcactagatgaattactatttatca 36694830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 35459637 - 35459575
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||  ||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  35459637 aataaaatagtatctgtaagtccaaaatgttgcaaacattactagatgaattactattgatca 35459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 44869777 - 44869823
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  44869777 taagtccaagatattgcaagcattactagatgaattactattgatca 44869823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1953909 - 1953852
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| |||||||| |||||||||||| ||| |||||||||||||||||    
T  1953909 aatagtacctgtaaatccaagattttgcaagcattattagatgaattactattgatca 1953852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 10555130 - 10555077
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattac 66  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  10555130 aataaaatagtacctgtaagtccaagatattgcaagcattactagatgaattac 10555077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34951978 - 34951921
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||||||||||    
T  34951978 aatagtacatgtaagtctaagatgttgcaagtcttactacatgaattactattgatca 34951921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 35859203 - 35859260
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||| | ||||||||||||||||||||| ||||||| |||||||||    
T  35859203 aatagtacttgtaagttcgagatgttgcaagcattactagatgaattaatattgatca 35859260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 9864417 - 9864467
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattacta 68  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||| ||||    
T  9864417 aatagtacctgtaagttcaagatgttgcaagcattactagatgaataacta 9864467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 30654504 - 30654466
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattacta 56  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30654504 aatagtacctgtaagtccaagatgttgcaagcattacta 30654466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 16446668 - 16446640
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccct 170  Q
    |||||||||||||||||||||||||||||    
T  16446668 gtttcctgactgcaccgtagaagctccct 16446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 49)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 22973992 - 22973930
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22973992 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 22973930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24886352 - 24886414
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24886352 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 24886414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5830162 - 5830219
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5830162 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 5830219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 35826391 - 35826334
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35826391 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 35826334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39573081 - 39573138
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39573081 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 39573138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27330569 - 27330631
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27330569 aataaaatggtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 27330631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1429067 - 1429010
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1429067 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 1429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31705517 - 31705460
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31705517 aatagtacatataagtccaagatgttgcaagcattactagatgaattactattgatca 31705460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 38528142 - 38528085
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38528142 aatagtacttgtaagtccaagatgttgcaagcattactagatgaattactattgatca 38528085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 12910620 - 12910679
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12910620 aatacaataatacatgtaagtccaagatgttgcaagcattactagatgaattactattga 12910679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 35504635 - 35504690
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  35504635 aatagtacatgtaagtccaagatgttgcaagtattactagatgaattactattgat 35504690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 35934161 - 35934223
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  35934161 aataaaatagtaccggtaagtccaagatgttgcaagcattactagttgaattattattgatca 35934223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 43308570 - 43308508
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  43308570 aataaaatagtacctgtaagtcgaagatgttgcaagcattactagatgaattactattgatca 43308508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 2888350 - 2888293
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  2888350 aatagtacctgtaagtccaagatgttacaagcattactagatgaattactattgatca 2888293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 13956267 - 13956210
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  13956267 aatagtacctgttagtccaagatgttgcaagcattactagatgaattactattgatca 13956210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 15992445 - 15992388
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  15992445 aatagtaccggtaagtccaagatgttgcaagcattactagatgaattactattgatca 15992388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22255452 - 22255509
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  22255452 aatagtacctgtaagtccaagatgttgcaagccttactagatgaattactattgatca 22255509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 25669846 - 25669903
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  25669846 aatagtacatgtaagtctaaaatgttgcaagcattactagatgaattactattgatca 25669903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33908503 - 33908559
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  33908503 aatagtacatgtaagtccaagatgttgcaagcattactagat-aattactattgatca 33908559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 35511387 - 35511330
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  35511387 aatagtacatgtaagttcaagatgttgcaagcattactatatgaattactattgatca 35511330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 699420 - 699475
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  699420 aatagtatctgtaagtccaagatgttgcaagcattactagatgaattactattgat 699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 25889635 - 25889697
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  25889635 aataaaatagtacctgtaaatccaagatgttgaaagcattactagatgaattactattgatca 25889697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5837825 - 5837882
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||    
T  5837825 aatagtacctgcaagtccaagatgttgcaagcattactagatgaattactgttgatca 5837882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7208769 - 7208712
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||    
T  7208769 aatagtacatgtaagttcaagatgttgcaagtattactagatgaattattattgatca 7208712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8437235 - 8437292
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||||||||| || ||||||||| |||||||||||||||||    
T  8437235 aatagtacctgtaagtccaagatgttgaaaacattactagatgaattactattgatca 8437292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 8741790 - 8741733
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||    
T  8741790 aatagtacatgtaagtccaaaatgttgcaagcatcactagatgaaatactattgatca 8741733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 14409246 - 14409189
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  14409246 aatagtacttgtaagtccaagatgttgcaaacattactaaatgaattactattgatca 14409189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 17157936 - 17157879
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  17157936 aatagtacttttaagtccaagatgttgcaagcattactagatgaattattattgatca 17157879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22981063 - 22981120
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22981063 aatagtatatgtaagtccaagatgttgcaatcattactagatgaattattattgatca 22981120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28416456 - 28416399
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||    
T  28416456 aatagtacttttaagtccaagatgttgcaagcattacttgatgaattactattgatca 28416399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31786551 - 31786498
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattg 71  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  31786551 aatagtacctgtaaatccaagatgttgcaagcattactagatgaattactattg 31786498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 42342991 - 42343048
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  42342991 aataggacatgtaagtctaagatgttgcaagcattactagatgaattaccattgatca 42343048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 8467005 - 8467053
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8467005 tgtaagtccaaaatgttgcaagcattactagatgaattactattgatca 8467053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 9200505 - 9200551
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  9200505 taagtctaagatgttgcaagcattactagatgaattactattgatca 9200551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7693491 - 7693544
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattg 71  Q
    |||| ||| |||||||| |||||||||||||||||||||| |||||||||||||    
T  7693491 aataatacttgtaagtctaagatgttgcaagcattactagatgaattactattg 7693544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 19120141 - 19120186
Alignment:
Q  30 aagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||    
T  19120141 aagtctaagatgttgcaagcattactagatgaattactattgatca 19120186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22019893 - 22019950
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| |||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  22019893 aataatacttgtaagtctaagatgttgtaagcattactagatgaattactattgatca 22019950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 25500831 - 25500774
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| |||| |||| |||||||    
T  25500831 aatagtacctgtaagtctaagatgttgcaagcattactagatgaaatactgttgatca 25500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32563410 - 32563467
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| ||||||||||||| |||||||| | ||||| |||||||||    
T  32563410 aatagtacatgtaagtctaagatgttgcaagaattactagataaattattattgatca 32563467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 36860703 - 36860751
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  36860703 tgtaagtccaagatgttgcaagcattactaaatgaattactattaatca 36860751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 40133664 - 40133712
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  40133664 tgtaagtccaagatgttgcaagcattactggatgaattactattaatca 40133712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15724758 - 15724815
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||| || ||| |||||||||||| |||||||||||| ||||    
T  15724758 aatagtacttgtaagtccaaaatattgtaagcattactagatgaattactattaatca 15724815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 23116127 - 23116090
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattact 55  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23116127 aatagtacctgtaagtccaagatgttgcaagcattact 23116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 6824381 - 6824329
Alignment:
Q  23 tacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||| |||||||||||||||| ||||| |||  ||||||||||||    
T  6824381 tacatgtaagtctaagatgttgcaagcatcactagatgagatactattgatca 6824329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 21088662 - 21088614
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  21088662 tgtaaatccaagatgttgtaagcattactagatgaattactattaatca 21088614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 36867041 - 36867089
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||| ||||||| | |||||||||||| ||||    
T  36867041 tgtaagtccaagatgttgcaaacattactggatgaattactattaatca 36867089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 14409118 - 14409089
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccctt 171  Q
    ||||||||||||||||||||||||||||||    
T  14409118 gtttcctgactgcaccgtagaagctccctt 14409089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 35511259 - 35511230
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccctt 171  Q
    ||||||||||||||||||||||||||||||    
T  35511259 gtttcctgactgcaccgtagaagctccctt 35511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 38528014 - 38527986
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccct 170  Q
    |||||||||||||||||||||||||||||    
T  38528014 gtttcctgactgcaccgtagaagctccct 38527986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 17272229 - 17272291
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17272229 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 17272291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 25184378 - 25184440
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25184378 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 25184440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 19440589 - 19440532
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19440589 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 19440532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 35025507 - 35025450
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35025507 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 35025450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 29584146 - 29584084
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29584146 aataaaatggtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 29584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 19089394 - 19089337
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19089394 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 19089337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32579716 - 32579773
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  32579716 aatagtacatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 32579773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33341668 - 33341725
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  33341668 aatagtacatgtaagtccaagatgttgtaagcattactagatgaattactattgatca 33341725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37663682 - 37663625
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37663682 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 37663625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37775928 - 37775985
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  37775928 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 37775985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 50764990 - 50765047
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  50764990 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 50765047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 9139501 - 9139556
Alignment:
Q  20 tagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  9139501 tagtacatgtaagtccaagatgttgcaagcattactagacgaattactattgatca 9139556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 879494 - 879432
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  879494 aataaaatagtacctgtaagtccaagatgttgcaagcattactagatgaattattattgatca 879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 37287998 - 37288052
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  37287998 aatagtacatgtaagtccaagatgttgcaagcattattagatgaattactattga 37288052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 47254005 - 47254067
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  47254005 aataaaatagtacatgcaagtctaagatgttgcaagcattactagatgaattactattgatca 47254067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4205254 - 4205311
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  4205254 aatagtacatgtaagtccaagatgttgcaagcatcactagatgaattactatttatca 4205311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28002927 - 28002870
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  28002927 aatagtacatgtaagtccaagatgttgctaacattactagatgaattactattgatca 28002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 30002582 - 30002525
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||    
T  30002582 aatagtacatttaagtctaagatgttgcaagcattactagatgaattactattgatca 30002525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33816457 - 33816400
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  33816457 aatagttcatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 33816400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 55477832 - 55477775
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  55477832 aatagtacatttaagtccaagatgttgcaagcattactagatgaattactattaatca 55477775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23431826 - 23431882
Alignment:
Q  19 atagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  23431826 atagtacctgtaagtccaagatgttgcaagcattagtagatgaattactattgatca 23431882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 34948036 - 34947980
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatc 74  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  34948036 aataatacatgtaagtccaagatgttgcaagcattactagatgaaatactattgatc 34947980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3042889 - 3042944
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  3042889 aatagtacatgtaagtccaacatgttgcaagcattactagatgaattagtattgat 3042944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32912521 - 32912463
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  32912521 aatagtacctgtaagtccaagatgttgcaagcattactagatgaatatactattgatca 32912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7152145 - 7152088
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  7152145 aatagtacctgtaagtccaagattttgcaagcattattagatgaattactattgatca 7152088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7703779 - 7703836
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  7703779 aatagtacctgtaagtcgaagatgttgcaagcattactagatgaattactatttatca 7703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 17167983 - 17168040
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  17167983 aatagtacatgtaagtctaagatgttgcaagcatcactagatgaattactatttatca 17168040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 17173560 - 17173617
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  17173560 aatagtacatgtaagtctaagatgttgcaagcatcactagatgaattactatttatca 17173617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 46888099 - 46888042
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  46888099 aatagtacctgtaaatccaagatgttacaagcattactagatgaattactattgatca 46888042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 49376237 - 49376294
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||    
T  49376237 aatagtacatgtaagtccaagaagttgaaagcattactaaatgaattactattgatca 49376294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 50697512 - 50697569
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  50697512 aatagtacctgtaattccaagatgttgtaagcattactagatgaattactattgatca 50697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 55241046 - 55240989
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||    
T  55241046 aatagtacatgtaagtccaagatgttgcaaacattactagataaattactattaatca 55240989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 6864314 - 6864362
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  6864314 tgtaagttcaagatgttgcaagcattactagatgaattactattgatca 6864362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 5047912 - 5047850
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||  ||||||| | ||||| |||||||||    
T  5047912 aataaaatagtacatgtaagtccaagatgttgcaagttttactagataaattattattgatca 5047850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 23761352 - 23761398
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  23761352 taagtccaagatgttgcaagcattactagatgaattattattgatca 23761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 27396897 - 27396943
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27396897 taagtccaaaatgttgcaagcattactagatgaattactattgatca 27396943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34361433 - 34361375
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  34361433 aatagtacctataagtccaagatgttgcaagcattactagatgaatatactattgatca 34361375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1815571 - 1815628
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| ||||||||||||||| ||||||||| |||||||| ||||||||    
T  1815571 aatagtacctgtaaatccaagatgttgcaaacattactagatgaattacaattgatca 1815628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 32592354 - 32592410
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatc 74  Q
    |||||||| ||||||| |||||||||| |||||||||||  ||||||||||||||||    
T  32592354 aatagtacctgtaagttcaagatgttgaaagcattactaaatgaattactattgatc 32592410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 38012119 - 38012169
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaat 63  Q
    |||| ||||||||||||||||||||||||||||||  |||||||| |||||    
T  38012119 aataaaatagtacatgtaagtccaagatgttgcaaatattactagatgaat 38012169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 39400289 - 39400335
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  39400289 taagttcaagatgttgcaagcattactagatgaatgactattgatca 39400335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 46884045 - 46883998
Alignment:
Q  26 atgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  46884045 atgtaagtcc--gatgttgcaagcattactagatgaattactattgatca 46883998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4598252 - 4598309
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||| ||| ||||||||||||||||||||| ||| | |||||||||||||||    
T  4598252 aataatacatttaaatccaagatgttgcaagcattattagattaattactattgatca 4598309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 36493630 - 36493573
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||| ||||| |||||||||||||| | |||||||||||||||||    
T  36493630 aatagtatctgtaagtctaagatattgcaagcattactcgatgaattactattgatca 36493573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 42200009 - 42200045
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaat 63  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42200009 tgtaagtccaagatgttgcaagcattactagatgaat 42200045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 34361304 - 34361273
Alignment:
Q  142 gtttcctgactgcaccgtagaagctcccttta 173  Q
    ||||||||||||||||||||||||||||||||    
T  34361304 gtttcctgactgcaccgtagaagctcccttta 34361273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 35020976 - 35020925
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactat 69  Q
    |||||||  |||||||||||||| |||||| ||||||||| |||||||||||    
T  35020976 aatagtatctgtaagtccaagatattgcaaacattactagatgaattactat 35020925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 56050200 - 56050234
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcatt 52  Q
    |||||||| ||||||||||||||||||||||||||    
T  56050200 aatagtacctgtaagtccaagatgttgcaagcatt 56050234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8157 - 8214
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8157 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 8214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 8286 - 8314
Alignment:
Q  143 tttcctgactgcaccgtagaagctccctt 171  Q
    |||||||||||||||||||||||||||||    
T  8286 tttcctgactgcaccgtagaagctccctt 8314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 408344 - 408287
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  408344 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 408287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 94015 - 93958
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  94015 aatagtacttgtaagtccaagatgttgcaagcattactagatgaattgctattgatca 93958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 412 - 455
Alignment:
Q  32 gtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  412 gtccaagatgttgcaagcattactagatgaattactattaatca 455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37110119 - 37110176
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37110119 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 37110176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 18797567 - 18797629
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18797567 aataaaatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 18797629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 5657397 - 5657340
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  5657397 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 5657340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 17842500 - 17842443
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17842500 aatagtacatgtaagtccaagatgttgcaagcattattagatgaattactattgatca 17842443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22687476 - 22687533
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  22687476 aatagtacatgtaagtccaagatgttgcaagcattaatagatgaattactattgatca 22687533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 27283989 - 27284046
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27283989 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 27284046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30055772 - 30055829
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30055772 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 30055829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31578980 - 31578923
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31578980 aataatacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 31578923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33688178 - 33688121
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  33688178 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattgctattgatca 33688121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 48928213 - 48928156
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  48928213 aatagtacatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 48928156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 15672677 - 15672618
Alignment:
Q  16 ataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  15672677 ataatagtacctgtaagtccaaaatgttgcaagcattactagatgaattactattgatca 15672618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9355742 - 9355685
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9355742 aatagtacttgtaagtccaagatgttgcaagcattactagatgaattgctattgatca 9355685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 12390565 - 12390508
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  12390565 aatagtacatgtaagtccaagatgttgcaaccattactagatgaattactatttatca 12390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 26588008 - 26587951
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  26588008 aataatacatgtaagtccaagatgttgcaggcattactagatgaattactattgatca 26587951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29173767 - 29173824
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29173767 aatagtatctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 29173824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32820969 - 32820912
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  32820969 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattaatca 32820912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 35353353 - 35353410
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  35353353 aatagtacatttaagtccaagatgttgcaagcattactagatgaatcactattgatca 35353410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 46481045 - 46480988
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  46481045 aatagtacatgtaagtctaagatgttgcaaacattactagatgaattactattgatca 46480988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7335033 - 7335095
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  7335033 aataaaatagtacctgtaaatccaagatgttgcaagcattactagatgaattactattaatca 7335095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8861530 - 8861587
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| ||||||||||||    
T  8861530 aatagtacatgtaagtctaagatgttgcatgcattactagatgaaatactattgatca 8861587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 11071448 - 11071505
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  11071448 aataatacctgtaagtccaagatgttgcaaacattactagatgaattactattgatca 11071505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12165988 - 12166045
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  12165988 aatagtatctgtaagtctaagatgttgcaagcattactagatgaattactattgatca 12166045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31520657 - 31520600
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  31520657 aatagtatctgtaagtccaagatgttgcaagcattactcgatgaattactattgatca 31520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32432697 - 32432754
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||    
T  32432697 aatagtacatgtaagtccaaggtgttgcaagcattactagatgaattattattaatca 32432754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37703414 - 37703357
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  37703414 aatagtatctgtaagtccaagatgttgcaaacattactagatgaattactattgatca 37703357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37704427 - 37704484
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||||||||||||||||||||||| || |||||||||||||||||    
T  37704427 aatagtatctgtaagtccaagatgttgcaagcattaccagatgaattactattgatca 37704484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41764994 - 41764937
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||    
T  41764994 aatagtacatgtaagtccaagattttgcaagcattactggatgaattattattgatca 41764937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 10481860 - 10481906
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattgatc 74  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  10481860 gtaagtccaagatgttgcaagtattactagatgaattactattgatc 10481906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 24211986 - 24212044
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24211986 aatagtacctataagtccaagatgttgcaagcattactagatgaatatactattgatca 24212044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6546764 - 6546821
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| ||||||  |||||||||||||| |||||||||||||||||    
T  6546764 aatagtacctgtaagtctaagatgaggcaagcattactagatgaattactattgatca 6546821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 15612675 - 15612618
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||| | |||||||    
T  15612675 aatagtacctgtaagtctaagatgttgcaagcattactagatgaattattgttgatca 15612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23111437 - 23111494
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||| || ||||||||| ||||||||||||  ||||||||||||||||    
T  23111437 aatagtacatgtaaatcaaagatgttgaaagcattactagaagaattactattgatca 23111494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37347266 - 37347323
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||||||||| |||||||||||||| | |||||||||||||||||    
T  37347266 aatagtatctgtaagtccaagatattgcaagcattactcgatgaattactattgatca 37347323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 44411447 - 44411402
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  44411447 tgtaagtccaagatgttgcaagcattactagatgaattaatattga 44411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 10359128 - 10359073
Alignment:
Q  20 tagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||| |||||||||||||| |||||||||||||||  ||| |||||||||||||    
T  10359128 tagtacttgtaagtccaagattttgcaagcattactaaatgatttactattgatca 10359073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 25691454 - 25691403
Alignment:
Q  24 acatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||| ||||||||| ||||||||| |||||||||||||||||    
T  25691454 acatgtaagttcaaaatgttgcaaacattactagatgaattactattgatca 25691403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 43925354 - 43925397
Alignment:
Q  32 gtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  43925354 gtccaagatgttgcaagcattactagatgaattactattaatca 43925397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32593122 - 32593065
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||| |||  |||||||| | ||||||||| |||||    
T  32593122 aatagtacatgtaagtccaagatgttacaaatattactagataaattactatggatca 32593065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34362094 - 34362037
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||||||||| |||||| ||||||||| ||||||||| |||||||    
T  34362094 aatagtatctgtaagtccaagatattgcaaacattactagatgaattacttttgatca 34362037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4583173 - 4583221
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||||||||||||||| | |||||||||||| ||||    
T  4583173 tgtaagttcaagatgttgcaagcattactggatgaattactattaatca 4583221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44598911 - 44598966
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||| |||||||| ||||||||||||| ||||  |||||||||||    
T  44598911 aataatacatgtaagtctaagatgttacaagcattactagatgaa--actattgatca 44598966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21991881 - 21991933
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||     || |||||||||||||||||    
T  21991881 aatagtacctgtaagtccaagatgttgcaagca-----agatgaattactattgatca 21991933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26980551 - 26980608
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||| ||||||||||||| |||||||| ||||||| | |||||||    
T  26980551 aatagtatctgtaagtctaagatgttgcaagtattactagatgaattattgttgatca 26980608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 27421281 - 27421252
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaa 47  Q
    ||||||||||||||||||||||||||||||    
T  27421281 aatagtacatgtaagtccaagatgttgcaa 27421252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 30055901 - 30055929
Alignment:
Q  143 tttcctgactgcaccgtagaagctccctt 171  Q
    |||||||||||||||||||||||||||||    
T  30055901 tttcctgactgcaccgtagaagctccctt 30055929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38053701 - 38053741
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcatta 53  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  38053701 aataaaatagtacctgtaagtccaagatgttgcaaacatta 38053741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 43686294 - 43686322
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattact 55  Q
    |||||||||||||||||||||||||||||    
T  43686294 tgtaagtccaagatgttgcaagcattact 43686322  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4015720 - 4015777
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4015720 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 4015777  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 22622633 - 22622576
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22622633 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 22622576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 26941175 - 26941118
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26941175 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 26941118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 22451224 - 22451286
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  22451224 aataaaatagtacatgtaagtccaagatgttgcaagcattactagatgaattattattgatca 22451286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 51212691 - 51212629
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51212691 aataaaatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 51212629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 11357296 - 11357239
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11357296 aatagtacttgtaagtccaagatgttgcaagcattactagatgaattactattgatca 11357239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 42505990 - 42505933
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42505990 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 42505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 54828616 - 54828559
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  54828616 aatagtacatgtaagtccaagatgttgcaagcattactagataaattactattgatca 54828559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 40552174 - 40552119
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  40552174 aatagtacatgtaagtccatgatgttgcaagcattactagatgaattactattgat 40552119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 46994581 - 46994519
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  46994581 aataaaatagtacctgtaagtccaagatattgcaagcattactagatgaattactattgatca 46994519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33378700 - 33378643
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  33378700 aatagtacatgtaagttcaagatgttgcaaacattactagatgaattactattgatca 33378643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 46297677 - 46297620
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46297677 aatagtatttgtaagtccaagatgttgcaagcattactagatgaattactattgatca 46297620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 34133196 - 34133246
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattacta 68  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  34133196 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattacta 34133246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 2008193 - 2008250
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||    
T  2008193 aatagtacttgtaagtccaagatgttgcaagcattactagatgaaataatattgatca 2008250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7327397 - 7327340
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  7327397 aatagtacttgtaagtctaagatgttgcaagcattactagatgaattactattaatca 7327340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29099607 - 29099664
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  29099607 aatagtacctttaagtccaagatgttgcaagcattactagatgaattaccattgatca 29099664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29164070 - 29164127
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||    
T  29164070 aatagtacttgtaagtctaagatgttacaagcattactagatgaattactattgatca 29164127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32373731 - 32373788
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  32373731 aatagtacttgtaagtctaagatgttgcaagcattactagatgaatttctattgatca 32373788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37157969 - 37158026
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||    
T  37157969 aatagtacatgtaagtccaatatgtcgcaagcattactagatgaattaccattgatca 37158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40936234 - 40936291
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||    
T  40936234 aatagtacatgcaagtctaagatgttgcaagcattactagataaattactattgatca 40936291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 43975807 - 43975750
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  43975807 aatagtacttgtaagtccaagattttgcaagcattactagatgaattaatattgatca 43975750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 50475072 - 50475129
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  50475072 aataatacttgtaagtccaagatgttgcaagcattactagatgaattagtattgatca 50475129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 52040837 - 52040780
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||    
T  52040837 aatagtacatgtaagtccaagatgttgcaaacattactagatgaatgattattgatca 52040780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 53229067 - 53229010
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  53229067 aataatacatgtaagttcaagatgttgcaagcattactagatgaattagtattgatca 53229010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 45174777 - 45174821
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  45174777 gtaagtccaagatgttgcaagcattactagatgaattactattga 45174821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 21009717 - 21009659
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  21009717 aatagtacctgtaagtctaagatgttgcaagcattactagatgaatatactattgatca 21009659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 47481783 - 47481841
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  47481783 aatagtacttgtaagttcaagatgttgcaagcattactagatgaatatactattgatca 47481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 48355197 - 48355259
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||  |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  48355197 aataaaatagtatctgtaagtccaagatgttgcaagtattactagatgaattattattgatca 48355259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1089955 - 1090011
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||| ||| |||||||| |||||||||||||||| |||||||||||||||||    
T  1089955 aatagtacat-taaatccaagattttgcaagcattactagatgaattactattgatca 1090011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 24708030 - 24707973
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||| ||||||||||||| ||| | |||||||||| ||||    
T  24708030 aatagtacatgtaagtccaagaagttgcaagcattattagataaattactattaatca 24707973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33698414 - 33698471
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||||||    
T  33698414 aatagtacctgtaagtctaagatattgcaagcattactagatgaattaatattgatca 33698471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 44186432 - 44186375
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | |||||| |||||||||||||||||||||| | |||||||||||||||    
T  44186432 aatagtacctctaagtctaagatgttgcaagcattactagataaattactattgatca 44186375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 14586585 - 14586538
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||||    
T  14586585 gtaagtccaagatgttgcaagcattactagataaattactactgatca 14586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11835548 - 11835494
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||||||  ||||||||||||||||||||| ||||||||  ||||||||||||||    
T  11835548 aatagtatttgtaagtccaagatgttgcaaacattactaaatgaattactattga 11835494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 36012411 - 36012457
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  36012411 taagtccaaaatgctgcaagcattactagatgaattactattgatca 36012457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 39282908 - 39282970
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||  ||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  39282908 aataaaatagtatctgtaaatccaaaatgttgcaagcattactagatgaattactattaatca 39282970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 3362528 - 3362573
Alignment:
Q  30 aagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||    
T  3362528 aagtccaatatgttgcaagcattactggatgaattactattgatca 3362573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 22445980 - 22445923
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | ||||||||| |||||||||| |||||| | |||||||||||||||||    
T  22445980 aatagtacctttaagtccaaaatgttgcaagtattactggatgaattactattgatca 22445923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37203329 - 37203386
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||| || | |||||||||||||| |||||||| ||||||||    
T  37203329 aatagtacctgtaagtccaatatatcgcaagcattactagatgaattaccattgatca 37203386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 44891770 - 44891815
Alignment:
Q  30 aagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||    
T  44891770 aagtctaagatgttgcaagcattactagatgaattactgttgatca 44891815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 3655111 - 3655060
Alignment:
Q  24 acatgtaagtccaagatgttgcaagcattactag--ttgaattactattgat 73  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||||    
T  3655111 acatataagtccaagatgttgcaagcattactagatatgaattactattgat 3655060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 24488867 - 24488820
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||| ||||||||||||||||||||||| || ||||||||| ||||    
T  24488867 gtaagttcaagatgttgcaagcattactagatgcattactattaatca 24488820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 25580018 - 25580057
Alignment:
Q  36 aagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  25580018 aagatattgcaagcattactagatgaattactattgatca 25580057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 54506079 - 54506126
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  54506079 taagtccaaaatgttgcaagcattactagatgaatatactattgatca 54506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 4761568 - 4761506
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| | ||||||||| ||||||||| |||||| || |||||||||||| ||||    
T  4761568 aataaaatagtacctataagtccaaaatgttgcaaacattaccagatgaattactattaatca 4761506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 53811639 - 53811597
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactatt 70  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||    
T  53811639 gtaagtccaagatgttgcaggcattcctagatgaattactatt 53811597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 21193878 - 21193923
Alignment:
Q  28 gtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||    
T  21193878 gtaagttcaagatgttgcaaccattactaaatgaattactattgat 21193923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 37203457 - 37203486
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccctt 171  Q
    ||||||||||||||||||||||||||||||    
T  37203457 gtttcctgactgcaccgtagaagctccctt 37203486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 37158097 - 37158125
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccct 170  Q
    |||||||||||||||||||||||||||||    
T  37158097 gtttcctgactgcaccgtagaagctccct 37158125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 11742278 - 11742221
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11742278 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 11742221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 14758298 - 14758355
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14758298 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 14758355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27532891 - 27532834
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27532891 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 27532834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 51129125 - 51129182
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51129125 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattactattgatca 51129182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1547537 - 1547594
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  1547537 aatagtacatgtaagtccaagatgttgcaagcattactagatgaattaccattgatca 1547594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16415912 - 16415969
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  16415912 aatagtacatgtaagtccaagatgttgcaagcattattagatgaattactattgatca 16415969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 25160898 - 25160955
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  25160898 aatagtacatgtaagtccaagatgttgcaagcattactatatgaattactattgatca 25160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40885079 - 40885136
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  40885079 aatagtacatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 40885136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 30254689 - 30254744
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30254689 aataatacatgtaagtccaagatgttgcaagcattactagatgaattactattgat 30254744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 19899679 - 19899621
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  19899679 aatagtacatgtaagtccaagatgttgcaagcattactagatgaatatactattgatca 19899621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 2960014 - 2960071
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2960014 aatagtatctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 2960071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 3535189 - 3535246
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3535189 aatagtacctttaagtccaagatgttgcaagcattactagatgaattactattgatca 3535246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8222394 - 8222450
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  8222394 aatagtacatgtaagtccaagatgttgcaagcattactagatgaatta-tattgatca 8222450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15168362 - 15168419
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  15168362 aatagtacatgtaagtacaagatgttgcaagcattattagatgaattactattgatca 15168419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27227395 - 27227338
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27227395 aatagtatctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 27227338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28564693 - 28564636
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  28564693 aataatacatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 28564636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 30326862 - 30326805
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  30326862 aataatacatttaagtccaagatgttgcaagcattactagatgaattactattgatca 30326805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 15383199 - 15383254
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  15383199 aatagtacctgtaaatccaagatgttgcaagcattactagatgaattactattgat 15383254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 18422923 - 18422974
Alignment:
Q  24 acatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  18422923 acatgtaagtccaagatgttgcaagcattgctagatgaattactattgatca 18422974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 10922988 - 10923050
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10922988 aataaaatagtatctgtaagtccaaaatgttgcaagcattactagatgaattactattgatca 10923050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23999613 - 23999671
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  23999613 aatagtacctgtaagtccaagatgttgcaagcattactagatgaatatactattgatca 23999671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32267300 - 32267354
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  32267300 aatagtacctgtaggtccaagatgttgcaagcattactagatgaattactattga 32267354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 37618811 - 37618757
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  37618811 aataatacatgtaagtccaagatgttgcaagcattactagatgaattagtattga 37618757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 3309419 - 3309476
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  3309419 aatagtacccgtaagtccaagatattgcaagcattactagatgaattactattgatca 3309476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4330547 - 4330604
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  4330547 aatagtacttgtaagtccaatatgttgcaagcattactagatgaattacaattgatca 4330604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27563815 - 27563758
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  27563815 aatagtatatgtaagtccaagatgttgcaagtattactagatgaattaatattgatca 27563758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28769919 - 28769976
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  28769919 aatagtacctgtaagtccaagatgttgcaaacattgctagatgaattactattgatca 28769976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34012292 - 34012235
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  34012292 aatagtatatgtaagttcaagatgttgcaagcattactatatgaattactattgatca 34012235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37451551 - 37451608
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  37451551 aatagtatctgtaagtccaagatgttgcaaacattactagatgaattactattgatca 37451608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 47682404 - 47682347
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  47682404 aatagtacctgtaaatccaagatgttgcaagcattactaaatgaattactattgatca 47682347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 238414 - 238366
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  238414 tgtaagtccaagatgttgcaagcattactagatgaattactattaatca 238366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 32216330 - 32216378
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  32216330 tgtaagtccaagatgttgcaagcattattagatgaattactattgatca 32216378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 27267110 - 27267055
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgat 73  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||||||||||||    
T  27267110 aatagtatctgtaagtctaagatgttgcaagcattactagatgaattactattgat 27267055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 41926418 - 41926479
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||    
T  41926418 aataaaatagtacttgtaagtccaagatatt-caagcattactagatgaattactattgatca 41926479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 46931675 - 46931733
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  46931675 aatagtacctgtaagtccaagatgttgcaagcattactagatgaatatattattgatca 46931733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 47279450 - 47279512
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||  ||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  47279450 aataaaatagtatctgtaagtccaagatgttgcaaacattattagatgaattactattgatca 47279512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7078973 - 7078916
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||| ||||||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  7078973 aatagtatatgtaagtctaagatattgcaaacattactagatgaattactattgatca 7078916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9902964 - 9902907
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||||||||||||| |||||||| |||||| |||||||||||||||||    
T  9902964 aatagtaccagtaagtccaagatgctgcaagcactactagatgaattactattgatca 9902907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 10181908 - 10181863
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattga 72  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  10181908 tgtaagtccaaaatgttgcaagcattactagatgaattactattga 10181863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31621459 - 31621402
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||| ||| ||||||||||||||| ||| |||| ||||||||||||    
T  31621459 aatagtacatgtaagttcaatatgttgcaagcattagtagatgaactactattgatca 31621402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38823480 - 38823537
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||| |||||||| || ||||||||||||||||||| |||||||||||||||||    
T  38823480 aataatacctgtaagtctaaaatgttgcaagcattactagatgaattactattgatca 38823537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39393650 - 39393707
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  39393650 aatagtaccggtaaatccaagatgttgcaaacattactagatgaattactattgatca 39393707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 42721302 - 42721359
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||  |||||||| | |||||||||||||||    
T  42721302 aatattacatgtaagtccaagatgttgcaattattactagattaattactattgatca 42721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 48353808 - 48353865
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  48353808 aatagtatctgtaagtccaagatattgcaagcattactagatgaattattattgatca 48353865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 21289877 - 21289923
Alignment:
Q  29 taagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  21289877 taagtccaagatgttgcaaacattactagatgaattattattgatca 21289923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1359845 - 1359788
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  1359845 aatagtacctgtaagttcaaaatgttgcaagcattactggatgaattactatcgatca 1359788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15752295 - 15752352
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| ||||||||||||||||| |||||||   ||||||| |||||||||||||||||    
T  15752295 aataatacatgtaagtccaagaagttgcaatttttactagatgaattactattgatca 15752352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27763221 - 27763163
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||  ||||||| ||||||||||||||||||||||| | ||| ||||||||||||    
T  27763221 aatagtatctgtaagttcaagatgttgcaagcattactagataaatatactattgatca 27763163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 31962890 - 31962939
Alignment:
Q  26 atgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||||||||||||||||| ||| |||| ||||||||||||    
T  31962890 atgtaagtttaagatgttgcaagcattattagatgaactactattgatca 31962939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 22170986 - 22171034
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| |||||||||||| ||||| ||| | |||||||||||||||    
T  22170986 tgtaagtctaagatgttgcaaacattattagataaattactattgatca 22171034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12179 - 12236
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  12179 aatagtacatgtaagtctaagatgttgcaagcattactagatgaattactattgatca 12236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 3879853 - 3879796
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3879853 aatagtacttgtaagtccaagatgttgcaagcattactagatgaattactattgatca 3879796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6091096 - 6091039
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6091096 aatagtacctgtaagtccaagatgttgcaagcattactagatgaattactattgatca 6091039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7234949 - 7234892
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  7234949 aatagtacatgtaagtccaagatgttgcaaacattactagatgaattactattgatca 7234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 20768352 - 20768409
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  20768352 aatagtacatgtaagtccaaggtgttgcaagcattactagatgaattactattgatca 20768409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 33619100 - 33619157
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  33619100 aatagtacatgtaagtccaatatgttgcaagcattactagatgaattactattgatca 33619157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 33892931 - 33892869
Alignment:
Q  13 aatataatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||| |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  33892931 aataaaatagtacatgtaagtccaagatgttgcaaacattactaaatgaattactattgatca 33892869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5627661 - 5627719
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  5627661 aatagtacctgtaagtccaagatgttgcaagcattactaggtgaatatactattgatca 5627719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 4318724 - 4318679
Alignment:
Q  30 aagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  4318724 aagtccaagatgttgcaagcattactagatgaattactattgatca 4318679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1946104 - 1946162
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||    
T  1946104 aatagtacatgtaagtccaagatgttacaagcattattagatgaatatactattgatca 1946162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6089173 - 6089230
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||||||||| ||||||||||||||||||  |||||||||||||||||    
T  6089173 aatagtaccagtaagtccaaaatgttgcaagcattactatatgaattactattgatca 6089230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8513498 - 8513555
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||  |||||||||| || |||||||||||||||| |||||||||||||||||    
T  8513498 aatagtaccggtaagtccaaaatcttgcaagcattactagatgaattactattgatca 8513555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 29182434 - 29182483
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattact 67  Q
    |||||||| |||||||| ||||||||||||| |||||||| |||||||||    
T  29182434 aatagtacttgtaagtctaagatgttgcaagtattactagatgaattact 29182483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 21017014 - 21016975
Alignment:
Q  36 aagatgttgcaagcattactagttgaattactattgatca 75  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  21017014 aagatgttgcaagcattactagatgaattactattaatca 21016975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7054687 - 7054629
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaat-tactattgatca 75  Q
    |||||||  ||||||||||||||||||||| ||||||||  ||||| ||||||||||||    
T  7054687 aatagtaactgtaagtccaagatgttgcaaacattactaaatgaatatactattgatca 7054629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 5627790 - 5627818
Alignment:
Q  142 gtttcctgactgcaccgtagaagctccct 170  Q
    |||||||||||||||||||||||||||||    
T  5627790 gtttcctgactgcaccgtagaagctccct 5627818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44226 - 44283
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  44226 aatagtacatgtaagtccaagttgttgcaagcattactgaatgaattactattgatca 44283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 154561 - 154504
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaattactattgatca 75  Q
    ||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  154561 aatagtacatgtaagtccaagttgttgcaagcattactgaatgaattactattgatca 154504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 267555 - 267602
Alignment:
Q  18 aatagtacatgtaagtccaagatgttgcaagcattactagttgaatta 65  Q
    |||| ||||||||||||||||||| |||||| |||||||| |||||||    
T  267555 aataatacatgtaagtccaagatgctgcaagaattactagatgaatta 267602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 100993 - 101023
Alignment:
Q  26 atgtaagtccaagatgttgcaagcattacta 56  Q
    |||||||||||||||||||||||||||||||    
T  100993 atgtaagtccaagatgttgcaagcattacta 101023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 145801 - 145772
Alignment:
Q  143 tttcctgactgcaccgtagaagctcccttt 172  Q
    ||||||||||||||||||||||||||||||    
T  145801 tttcctgactgcaccgtagaagctcccttt 145772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 145922 - 145893
Alignment:
Q  27 tgtaagtccaagatgttgcaagcattacta 56  Q
    ||||||||||||||||||||||||||||||    
T  145922 tgtaagtccaagatgttgcaagcattacta 145893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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