View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18034_high_17 (Length: 225)
Name: NF18034_high_17
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 2535958 - 2536160
Alignment:
| Q |
17 |
agttccaaatgagaaggtgagaaaattataat--ccgtcaatttatgttttccatttattcatgtttaggttaacgtagctctgaagcacaaaatttatg |
114 |
Q |
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| T |
2535958 |
agttccaaatgagaaggtgagaaaattataatatccgtcaatttatgttttccatttattcatgtttaggttaacgtagctctgaagcacaaaatttatg |
2536057 |
T |
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| Q |
115 |
caggtctacaacttagttttggttatgagtttttgtgcacagttctttcc-tttttgttatcaataatgggtgatcattttctttctttttgcctttgct |
213 |
Q |
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| T |
2536058 |
caggtctacaacttagttttggttatgagtttttgtgcacagttctttccttttttgttatcaataatgggcgatcattttctttctttttgcccttgtt |
2536157 |
T |
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| Q |
214 |
tct |
216 |
Q |
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||| |
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| T |
2536158 |
tct |
2536160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 2523709 - 2523525
Alignment:
| Q |
17 |
agttccaaatgagaaggtgagaaaattataat--ccgtcaatttatgttttccatttattcatgttt-aggttaacgtagctctgaagcacaaaatttat |
113 |
Q |
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|||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||||||| || |
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| T |
2523709 |
agttccaaatgagaaggtgagaaacttgaaatatccgtcaatttatgttttccatttattcatgttttatgttaacgtagctttgaatctcaaaattcat |
2523610 |
T |
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| Q |
114 |
gcaggtctacaacttagttttggttatgagtttttgtgcacagttctttcctttttgttatcaataatgggtgatcattttctttcttttt |
204 |
Q |
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| T |
2523609 |
gcaggtctagaacttagtttcgattatgagtttttgtgcatagttctttcctttttgttatc------gggtgatcattttccttcttttt |
2523525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 2536439 - 2536560
Alignment:
| Q |
61 |
gttttccatttattcatgttt-aggttaacgtagctctgaagcacaaaatttatgcaggtctacaacttagttttggttatgagtttttgtgcacagttc |
159 |
Q |
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||||| ||||||||||||||| | |||||||||||| |||| |||||||||||||| |||||||||| | | |||| |||||||||||||||| ||||| |
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| T |
2536439 |
gttttacatttattcatgttttatgttaacgtagctttgaatcacaaaatttatgctggtctacaaccttgctttgattatgagtttttgtgcgtagttc |
2536538 |
T |
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| Q |
160 |
tttcctttttgttatcaataat |
181 |
Q |
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|||||| ||||||||| ||||| |
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| T |
2536539 |
tttcctatttgttatcgataat |
2536560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 2524157 - 2524066
Alignment:
| Q |
113 |
tgcaggtctacaacttagttttggttatgagtttttgtgcacagttctttcctttttgttatcaataatgggtgatcattttctttcttttt |
204 |
Q |
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| T |
2524157 |
tgcaggtctacaacctagttttgattttgactttttgtgcacagttctttcatttttggtatccataatgggtgatcattttccttcttttt |
2524066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 2535597 - 2535688
Alignment:
| Q |
113 |
tgcaggtctacaacttagttttggttatgagtttttgtgcacagttctttcctttttgttatcaataatgggtgatcattttctttcttttt |
204 |
Q |
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|||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| | |||||||| |
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| T |
2535597 |
tgcaagtctacaacctagttttgattatgagtttttgtgcacagctctttcctttttgctatcgataatgggtgatcatttaccttcttttt |
2535688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 2523257 - 2523153
Alignment:
| Q |
17 |
agttccaaatgagaaggtgagaaaattataat--ccgtcaatttatgttttccatttattcatgtttaggttaacgtagctctgaagcacaaaatttatg |
114 |
Q |
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||||||||||||||| |||||||| | ||||| ||||| ||||||||||| ||||||||||||||| |||| ||||| |||| |||||||| ||| |
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| T |
2523257 |
agttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttattcatgttttatgtaacatagctttgaatcacaaaatctata |
2523158 |
T |
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| Q |
115 |
caggt |
119 |
Q |
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||||| |
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| T |
2523157 |
caggt |
2523153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 1770396 - 1770315
Alignment:
| Q |
121 |
tacaacttagttttggttatgagtttt-tgtgcacagttctttcctttttgttatcaataatgggtgatcattttctttctt |
201 |
Q |
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|||||| || ||||| ||||| ||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
1770396 |
tacaacctacttttgattatgggttttctgtgcatagttctttcctttatgttatcgataatgggtgatcattttccttctt |
1770315 |
T |
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