View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18034_low_2 (Length: 491)
Name: NF18034_low_2
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_low_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 173 - 491
Target Start/End: Complemental strand, 35157902 - 35157584
Alignment:
| Q |
173 |
tctagtttgttgagataatttgtgttgaagttttttcgggacttattttaaaaggtcaagagggtaagatttatggaatcactattgctaggatttctct |
272 |
Q |
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| T |
35157902 |
tctagtttgttgagataatttgtgttgaagttttttcgggacttattttaaaaggtcaagagggtaagatttatggaatcactattgctaggaatgctct |
35157803 |
T |
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| Q |
273 |
cctatttcccatttgtttttgctgatgatagcattctgttttacaaggctagtaaaatggaagcaaagttcttaatggagtcattcaaagaatatcaatt |
372 |
Q |
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| T |
35157802 |
cctatttcccatttgtttttgctgatgatagcattctgttttacaagactagtaaaatggaagcaaagttcttaatggagtcattcaaagaatatcaatt |
35157703 |
T |
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| Q |
373 |
gtcttcaggatgtacaaaagataaatctagacaagttgaaatgatttttacattttagtacttatacttctttgcataaaagctcattttcataccttat |
472 |
Q |
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| T |
35157702 |
gtcttcaggatgtacaaaagataaatctagacaagttgaaatggtttttacattttagtacttatacttctttgcataaaagctcattttcataccttat |
35157603 |
T |
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| Q |
473 |
attaaccatgattattttg |
491 |
Q |
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| T |
35157602 |
attaaccatgattattttg |
35157584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 35158259 - 35158107
Alignment:
| Q |
8 |
tagcaaagggattatcttgctaaatcgggtcacaagaaaattgtaagggacaaaattggatttttgcactttttatccacaatcataagctctttggttg |
107 |
Q |
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| T |
35158259 |
tagcaaagggattatcttgctaaatcgggtcacaagaaaattgtaagggacaaaattggatttttgctctttttatccacaatcataagctctttggttg |
35158160 |
T |
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| Q |
108 |
aaggtaccaaaatcgattcaaaacacaagtattgaaatattgagattattcac |
160 |
Q |
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| T |
35158159 |
aaggtaccaaaatcgattcaaaacacaagtattgaaatattgagattattcac |
35158107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 35152977 - 35152926
Alignment:
| Q |
98 |
tctttggttgaaggta---ccaaaatcgattcaaaacacaagtattgaaata |
146 |
Q |
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| T |
35152977 |
tctttggttgaaggtagtaccaaaatcgattcaaaacaaaagtattgaaata |
35152926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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