View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18034_low_6 (Length: 374)
Name: NF18034_low_6
Description: NF18034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18034_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 31813736 - 31814071
Alignment:
| Q |
20 |
atacctggtgaaaagcacaacttgctaggggagctgagtgaggtgaaagcgagcaaaaacataa-agttttaaatggaaatttcaaaggcggttctctag |
118 |
Q |
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| T |
31813736 |
ataccaggtgaaaagcacaacttgctaagggagctgagtgaggtgaaagcgagcaaaaacataagagttttaaatgaaaatttcaaaggcggttctctag |
31813835 |
T |
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| Q |
119 |
gcgagttttggctg-cctagcgaactaagaaggttcnnnnnnntatttaaagacaactggttttttcctccaagaaagaaatcttgattcattaagcaag |
217 |
Q |
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| T |
31813836 |
gcgagctttggctggcctagcgaactaagaaggttcaagaaaatatttgaagacagctggttttttcctctaagaaagaaatcttgattcattaggcaag |
31813935 |
T |
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| Q |
218 |
tcttgcttcgcctagcgaaattacataacctttataaatagaacagaggtgtatctcatttttgtagaagttaatcattgaaaaccgaactaaatagaga |
317 |
Q |
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| T |
31813936 |
tcttgcttcgtctagagaaattacataacctctataaataga-----ggtgtatctcatttttgtagaagttaatcattgaaaaccgaactaaatagaga |
31814030 |
T |
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| Q |
318 |
gagaactcaagcattggagggctaggaagcttgaattcaag |
358 |
Q |
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| T |
31814031 |
gagaactcaagcattggagggctaggaagcttgaattcaag |
31814071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 18758044 - 18758154
Alignment:
| Q |
44 |
ctaggggagctgagtgaggtgaaagcgagcaaaaacataaagttttaaatggaaatttcaaaggcggttctctaggcgagttttggc-tgcctagcgaac |
142 |
Q |
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| T |
18758044 |
ctaggggagttgagcaaagtgaaagcgagcccaaataaagagttctaaaagaaaattctaaaggcggtttcctaggcgagttttggcttgcctagcgaac |
18758143 |
T |
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| Q |
143 |
taagaaggttc |
153 |
Q |
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| T |
18758144 |
taagacggttc |
18758154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 37168042 - 37167956
Alignment:
| Q |
62 |
gtgaaagcgagcaaaaacataaagttttaaatggaaatttcaaaggcggttctctaggcgagttttggc-tgcctagcgaactaaga |
147 |
Q |
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| T |
37168042 |
gtgaaagcgaaccaaaacagagagtttcataaggaaatattaaaggcggttcgctaggtgagttttggcttgcctagcgaactaaga |
37167956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 54683152 - 54683237
Alignment:
| Q |
62 |
gtgaaagcgagcaaaaacataaagttttaaatggaaatttcaaaggcggttctctaggcgagttttggc-tgcctagcgaactaag |
146 |
Q |
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| T |
54683152 |
gtgaaagcgaaccaaaacagagagtttcataaggaaatattaaaggcggttcgctaggtgagttttggcttgcctagcgaactaag |
54683237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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