View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_high_1 (Length: 634)
Name: NF18035_high_1
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Original strand, 53117843 - 53118445
Alignment:
| Q |
8 |
gagcacagacttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatg |
107 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
53117843 |
gagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattcaattcagtatatg |
53117942 |
T |
|
| Q |
108 |
cattgcaaagctgaaaattaacagaaaaacagtgacaa-gaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53117943 |
cattgcaaagctgaaaattaacagaaaaacagtgacaaagaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
53118042 |
T |
|
| Q |
207 |
tggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgtagcttaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53118043 |
tggttttgatctgtgccactttgccaaaggactcatgatctcgggatgatttatgatgaatgtaggactgacacgtgtttcttccaaaatgtagcttaca |
53118142 |
T |
|
| Q |
307 |
agctgcaatatggaccaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcaga |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53118143 |
agctgcaatatg-accaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcaga |
53118241 |
T |
|
| Q |
407 |
tcagatgacattgtaatccaatttctgaactatttttatgttcaatatctgttaagcaactccaaaccatgccaacaaatctttttgctcaattcaacaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53118242 |
tcagatgacattgtaatccaatttctgaactatttttatgttcaatatctgttaagcaactccaaaccatgccaacaaatctttttgctcaattcaacaa |
53118341 |
T |
|
| Q |
507 |
gggaaaagagattacaacatgattttgaatnnnnnnnnnnnnttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttataca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53118342 |
gggaaaagagattacaacatgattttgaataaaaacaaaaaattgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatcca |
53118441 |
T |
|
| Q |
607 |
acac |
610 |
Q |
| |
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|||| |
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|
| T |
53118442 |
acac |
53118445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 163 - 457
Target Start/End: Original strand, 53108673 - 53108966
Alignment:
| Q |
163 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
262 |
Q |
| |
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||||||||||||||||||||||||| |||||| | ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53108673 |
acttcatgcttattgacgaacaattcaaaacgttcggtcaggcctggttttaatctgtgccactttgccaaaggactcatgatctcgggatgatttatga |
53108772 |
T |
|
| Q |
263 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctgcaatatggaccaaacttagaatca-taaccacaacttattaagcaaatgac |
361 |
Q |
| |
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||||||||||| |||||| | |||||||||||| || | |||||||||||| | ||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
53108773 |
tgaatgtaggattgacacatgtttcttccaaaaagtgtccgacaagctgcaatgt-gaccaaacttagaatcattaaccacagcttattaatcaaatgac |
53108871 |
T |
|
| Q |
362 |
tgatattgtgagtgaagaatgttccataattctatgcaaagcagatcagatgacattgtaatccaatttctgaactatttttatgttcaatatctg |
457 |
Q |
| |
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| ||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| |||| |
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| T |
53108872 |
taatattgtgagttaagaatgtcccatatttctatgcaaagcagatcagatcacattttaatccaatttctgaact-tttttacgttcaatttctg |
53108966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 53113601 - 53113744
Alignment:
| Q |
23 |
ttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaagctgaa |
122 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
|
| Q |
123 |
aattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaactt |
53113744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 53108484 - 53108632
Alignment:
| Q |
18 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
117 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |
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| T |
53108484 |
ttaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaaag |
53108583 |
T |
|
| Q |
118 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
53108584 |
ctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaactt |
53108632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 53113813 - 53113932
Alignment:
| Q |
199 |
gtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgt |
298 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| || |
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| T |
53113813 |
gtcaggcctggtttcgttctgtgccactttgccaaagggctcatgatctcgggatgatttatgatgaatgtaggattgacacatgtttcttccaaaaagt |
53113912 |
T |
|
| Q |
299 |
agcttacaagctgcaatatg |
318 |
Q |
| |
|
|| | ||||||| |||||| |
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|
| T |
53113913 |
ggcctgcaagctgaaatatg |
53113932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 53126288 - 53126436
Alignment:
| Q |
18 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
117 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||| |||||||||| || ||| || || |||| ||||| ||||||||||||||||||||| |
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|
| T |
53126288 |
ttaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaag |
53126387 |
T |
|
| Q |
118 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
166 |
Q |
| |
|
||||||| ||||| |||||| ||| |||||| || ||| |||| |||| |
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|
| T |
53126388 |
ctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcactt |
53126436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 163 - 311
Target Start/End: Original strand, 53126475 - 53126623
Alignment:
| Q |
163 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
262 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||||| |||| |||||||||||| | || ||||| ||||| |||| |
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|
| T |
53126475 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtttttctctgtgcgacttggccaaaggactcattatttcggggtgattcatga |
53126574 |
T |
|
| Q |
263 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctg |
311 |
Q |
| |
|
||||||||||| |||||| |||||||||||| || || ||||||||| |
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|
| T |
53126575 |
tgaatgtaggattgacacacgtttcttccaaaaagtggcctacaagctg |
53126623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 53126861 - 53126921
Alignment:
| Q |
549 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatacaaca |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53126861 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttatccaaca |
53126921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 549 - 603
Target Start/End: Original strand, 53109037 - 53109091
Alignment:
| Q |
549 |
ttgaaaataaagcatattataggccaacaaagaaacagattgtacattactttat |
603 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53109037 |
ttgaaaacaaagcatattataggccaacaaagaaacagattgtacattactttat |
53109091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 53114466 - 53114522
Alignment:
| Q |
553 |
aaataaagcatattataggccaacaaagaaacagattgtacattactttatacaaca |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
53114466 |
aaataaagcatattataggccaacaaagaaacagattgtgaattactttatccaaca |
53114522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 15841201 - 15841087
Alignment:
| Q |
181 |
aacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacac |
280 |
Q |
| |
|
||||||| |||||| | ||||| |||||||||| |||||||||||| |||||||||||| | ||||| || || |||||||||||||||||| |||||| |
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|
| T |
15841201 |
aacaattcaaaacgttcagtcaggcctggttttgttctgtgccacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacac |
15841102 |
T |
|
| Q |
281 |
gtttttcttccaaaa |
295 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
15841101 |
atgtttcctccaaaa |
15841087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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