View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_high_15 (Length: 296)
Name: NF18035_high_15
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 112 - 286
Target Start/End: Complemental strand, 40802051 - 40801878
Alignment:
| Q |
112 |
tttagatctcgagagagtaattttttcaacttagatctaactctctccaccattgttgcacgtacca-tat-atacagctgttatagagaatccaagtcc |
209 |
Q |
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| T |
40802051 |
tttagatcttgagagagtaattttctcaacttagatctaactctctccacc-ttgttgcacgtaccaataccatacagctgttatagagaatccaagtcc |
40801953 |
T |
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| Q |
210 |
attatattgatgttaaaaatgagagagagatcgataagttatatatattagagcaaagccagtgatcttaccctttg |
286 |
Q |
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| T |
40801952 |
attatattgatgttaaaaatgaga--gagatcgataagttatatatattagagcaaagctagtgatcttaccctttg |
40801878 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40802144 - 40802081
Alignment:
| Q |
19 |
ctaggactgtccttgaacatgcacaattgcttatacattatacatacacaaactataggctgag |
82 |
Q |
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| T |
40802144 |
ctaggactgtccttgaacatgcacaattgcttatacattatacatacacaaactataggctgag |
40802081 |
T |
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