View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18035_high_17 (Length: 246)

Name: NF18035_high_17
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18035_high_17
NF18035_high_17
[»] chr4 (5 HSPs)
chr4 (1-91)||(43864826-43864916)
chr4 (110-200)||(43864752-43864836)
chr4 (199-233)||(21351352-21351386)
chr4 (198-233)||(22118268-22118303)
chr4 (199-233)||(36518420-36518454)
[»] chr6 (3 HSPs)
chr6 (198-233)||(35039092-35039127)
chr6 (198-232)||(18310006-18310040)
chr6 (198-232)||(17936979-17937013)
[»] chr5 (3 HSPs)
chr5 (198-233)||(20745700-20745735)
chr5 (199-233)||(20337169-20337203)
chr5 (194-233)||(17994790-17994829)
[»] chr1 (1 HSPs)
chr1 (199-233)||(44404658-44404692)
[»] chr2 (2 HSPs)
chr2 (200-233)||(5250322-5250355)
chr2 (192-224)||(11704529-11704561)
[»] chr3 (3 HSPs)
chr3 (200-233)||(50736612-50736645)
chr3 (200-233)||(50776210-50776243)
chr3 (199-231)||(16339284-16339316)
[»] chr7 (2 HSPs)
chr7 (205-233)||(17470775-17470803)
chr7 (205-233)||(17582411-17582439)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43864916 - 43864826
Alignment:
Q  1 cacacttttctttgtgaatagattgtatacaaatgcatgctgtagtgtgtgaatgccacaaatccatgctaacatattctaagattatgac 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43864916 cacacttttctttgtgaatagattgtatacaaatgcatgctgtagtgtgtaaatgccacaaatccatgctaacatattctaagattatgac 43864826  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 43864836 - 43864752
Alignment:
Q  110 aagattatgacttaattagcttatttctttttgttatgaatatgaatgaaattagtgtcacttgtacatagtgaagttgtaatctatctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  43864836 aagattatgacttaattagcttatttctttttgttatgaat------gaaattagtgtcacttgtacatagtgaagttgtaatctatctat 43864752  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 21351352 - 21351386
Alignment:
Q  199 atctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||||||||    
T  21351352 atctacttactatattataaaattaaatgcctatg 21351386  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 22118303 - 22118268
Alignment:
Q  198 tatctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||| |||||    
T  22118303 tatctacttactatattataaaattaaatgtctatg 22118268  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 36518454 - 36518420
Alignment:
Q  199 atctacttactatattataaaattaaatgcctatg 233  Q
    ||||||||||||||||| |||||||||||||||||    
T  36518454 atctacttactatattacaaaattaaatgcctatg 36518420  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 35039092 - 35039127
Alignment:
Q  198 tatctacttactatattataaaattaaatgcctatg 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  35039092 tatctacttactatattataaaattaaatgcctatg 35039127  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 18310006 - 18310040
Alignment:
Q  198 tatctacttactatattataaaattaaatgcctat 232  Q
    |||||||||||||||||||||||||||||||||||    
T  18310006 tatctacttactatattataaaattaaatgcctat 18310040  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 17936979 - 17937013
Alignment:
Q  198 tatctacttactatattataaaattaaatgcctat 232  Q
    ||||||||| |||||||||||||||||||||||||    
T  17936979 tatctacttgctatattataaaattaaatgcctat 17937013  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 20745700 - 20745735
Alignment:
Q  198 tatctacttactatattataaaattaaatgcctatg 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  20745700 tatctacttactatattataaaattaaatgcctatg 20745735  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 20337169 - 20337203
Alignment:
Q  199 atctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||||||||    
T  20337169 atctacttactatattataaaattaaatgcctatg 20337203  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 17994790 - 17994829
Alignment:
Q  194 tatctatctacttactatattataaaattaaatgcctatg 233  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  17994790 tatcaatctacttactatattataaagttaaatgcctatg 17994829  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 44404658 - 44404692
Alignment:
Q  199 atctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||||||||    
T  44404658 atctacttactatattataaaattaaatgcctatg 44404692  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 5250322 - 5250355
Alignment:
Q  200 tctacttactatattataaaattaaatgcctatg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatg 5250355  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 11704529 - 11704561
Alignment:
Q  192 tctatctatctacttactatattataaaattaa 224  Q
    |||||||||||||||||||||||||||||||||    
T  11704529 tctatctatctacttactatattataaaattaa 11704561  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 50736612 - 50736645
Alignment:
Q  200 tctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||| |||||    
T  50736612 tctacttactatattataaaattaaatgtctatg 50736645  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 50776243 - 50776210
Alignment:
Q  200 tctacttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||| |||||    
T  50776243 tctacttactatattataaaattaaatgtctatg 50776210  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 16339284 - 16339316
Alignment:
Q  199 atctacttactatattataaaattaaatgccta 231  Q
    |||||||||||||||||||||||||||| ||||    
T  16339284 atctacttactatattataaaattaaattccta 16339316  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 17470775 - 17470803
Alignment:
Q  205 ttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||    
T  17470775 ttactatattataaaattaaatgcctatg 17470803  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 17582439 - 17582411
Alignment:
Q  205 ttactatattataaaattaaatgcctatg 233  Q
    |||||||||||||||||||||||||||||    
T  17582439 ttactatattataaaattaaatgcctatg 17582411  T

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