View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_high_19 (Length: 215)
Name: NF18035_high_19
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 41706968 - 41706785
Alignment:
| Q |
17 |
aatattggggctagattttctcatgtcatcatcttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattatta |
116 |
Q |
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| T |
41706968 |
aatattggggctagattttctcatgtcatcatcttaacagtgacaacatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattatta |
41706869 |
T |
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| Q |
117 |
taattaattaacnnnnnnntatacatgcatataaatacatagttac-gtcatccaccactcaagagcacacgagtggatgaacc |
199 |
Q |
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| T |
41706868 |
taattaattaacaaaaaaatatacatgcatataaatacatagttacagtcattcaccactcaagagcacacgagtgtatgaacc |
41706785 |
T |
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