View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18035_high_2 (Length: 616)

Name: NF18035_high_2
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18035_high_2
NF18035_high_2
[»] chr6 (7 HSPs)
chr6 (419-600)||(20879437-20879618)
chr6 (419-600)||(21685614-21685795)
chr6 (211-298)||(20879244-20879331)
chr6 (211-298)||(21685901-21685988)
chr6 (146-184)||(16735888-16735926)
chr6 (330-375)||(20879356-20879401)
chr6 (330-375)||(21685831-21685876)
[»] chr5 (4 HSPs)
chr5 (428-600)||(22543328-22543501)
chr5 (211-298)||(22543127-22543213)
chr5 (428-544)||(21116612-21116723)
chr5 (329-375)||(22543238-22543284)
[»] chr8 (1 HSPs)
chr8 (428-544)||(43653411-43653522)
[»] chr2 (1 HSPs)
chr2 (49-106)||(30515632-30515689)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 419 - 600
Target Start/End: Original strand, 20879437 - 20879618
Alignment:
Q  419 agttccctgattgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtatta 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | || | |||||||||| |||||||||||||| |||||||||||||||||    
T  20879437 agttccctaattgagattgggttttcttcatctgctttgttcttatttatcgatttgcatgaaattccttaagttgtactttcatagaatttatgtatta 20879536  T
Q  519 ttgtgaagcaattgattgttattatttgttatcaatcggtgataaaagagaggaaagaaaaataagctttgaattgtatttg 600  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  20879537 ttgtgaagcaattgattgtcattatttattgtcaatcggtgatagaagagaggaaagaaaaataagttttgaattgtatttg 20879618  T

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Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 419 - 600
Target Start/End: Complemental strand, 21685795 - 21685614
Alignment:
Q  419 agttccctgattgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtatta 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | || | |||||||||| |||||||||||||| |||||||||||||||||    
T  21685795 agttccctaattgagattgggttttcttcatctgctttgttcttatttatcgatttgcatgaaattccttaagttgtactttcatagaatttatgtatta 21685696  T
Q  519 ttgtgaagcaattgattgttattatttgttatcaatcggtgataaaagagaggaaagaaaaataagctttgaattgtatttg 600  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21685695 ttgtgaagcaattgattgtcattatttattgtcaatcggtgatagaagagaggaaagaaaaataagttttgaattgtatttg 21685614  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 20879244 - 20879331
Alignment:
Q  211 acagaaagtcatagaacgacacggacataaaagaagggaatctcttagatagagagttttagacagaaaaatcaggaatggagaaagg 298  Q
    ||||||| |||||||||| || | ||||||| |||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||    
T  20879244 acagaaaatcatagaacggcaggaacataaaggaagggaatctcatagatatagagttttaaacagaaaaataaggaatggagaaagg 20879331  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 21685988 - 21685901
Alignment:
Q  211 acagaaagtcatagaacgacacggacataaaagaagggaatctcttagatagagagttttagacagaaaaatcaggaatggagaaagg 298  Q
    ||||||| |||||||||| || | ||||||| |||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||    
T  21685988 acagaaaatcatagaacggcaggaacataaaggaagggaatctcatagatatagagttttaaacagaaaaataaggaatggagaaagg 21685901  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 16735926 - 16735888
Alignment:
Q  146 ctattgcaatatacttctgcattcataagatttgttgat 184  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16735926 ctattgcaatatacttctgcattcataagatttgttgat 16735888  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 20879356 - 20879401
Alignment:
Q  330 ggggactacgactcgacaaataatcgagttccaacgctctatcatc 375  Q
    ||||||||| ||||||||| ||||||||||||||| |||| |||||    
T  20879356 ggggactactactcgacaagtaatcgagttccaacactctttcatc 20879401  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 21685876 - 21685831
Alignment:
Q  330 ggggactacgactcgacaaataatcgagttccaacgctctatcatc 375  Q
    ||||||||| ||||||||| ||||||||||||||| |||| |||||    
T  21685876 ggggactactactcgacaagtaatcgagttccaacactctttcatc 21685831  T

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Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 428 - 600
Target Start/End: Original strand, 22543328 - 22543501
Alignment:
Q  428 attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtattattgtgaagc 527  Q
    ||||||||| |||||||||||||||||||||||||||||||| || | |||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  22543328 attgagatttggttttcttcatctgctttgttcttatttaccgatttccatgaaattccttaagttctattttgatagaatttatgtattattgtgaagc 22543427  T
Q  528 aattgattgttattatttgttatcaatcggtgataaaagagaggaaag-aaaaataagctttgaattgtatttg 600  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  22543428 aattgattgttattatttattgtcaatcggtgatagaagagaggaaagaaaaaataagctttgaattgtatttg 22543501  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 22543127 - 22543213
Alignment:
Q  211 acagaaagtcatagaacgacacggacataaaagaagggaatctcttagatagagagttttagacagaaaaatcaggaatggagaaagg 298  Q
    ||||||| |||||||||| |  | ||||||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  22543127 acagaaaatcatagaacggcgggaacataaa-gaagggaatctcatagatagagagttttagacaaaaaaataaggaatggagaaagg 22543213  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 21116723 - 21116612
Alignment:
Q  428 attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgt-attattgtgaag 526  Q
    |||||||||||  |||||||||||||||| ||||||||| |||||     |||||||| || | ||||| |||||| |||||||||| | |||||| |||    
T  21116723 attgagattgg--tttcttcatctgcttttttcttattttcctat----ttgaaattccttgaattgtagtttgatcgaatttatgtaactattgtaaag 21116630  T
Q  527 caattgattgttattatt 544  Q
    |||||| |||||||||||    
T  21116629 caattggttgttattatt 21116612  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 22543238 - 22543284
Alignment:
Q  329 gggggactacgactcgacaaataatcgagttccaacgctctatcatc 375  Q
    |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  22543238 gggggactactactcgacaagtaatcgagttccaacgctctttcatc 22543284  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 43653522 - 43653411
Alignment:
Q  428 attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgt-attattgtgaag 526  Q
    |||||||||||  |||||||||||||||| ||||||||| |||||     |||||||| || | ||||| |||||| |||||||||| | |||||| |||    
T  43653522 attgagattgg--tttcttcatctgcttttttcttattttcctat----ttgaaattccttgaattgtagtttgatcgaatttatgtaactattgtaaag 43653429  T
Q  527 caattgattgttattatt 544  Q
    |||||| |||||||||||    
T  43653428 caattggttgttattatt 43653411  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 30515632 - 30515689
Alignment:
Q  49 tcttttgcttcaacctgtggcaatttttgaatcattttgttcatggttgaattaaaca 106  Q
    ||||||||||||| ||||| ||||||||||||| |||| ||||||||  |||||||||    
T  30515632 tcttttgcttcaaactgtgacaatttttgaatccttttcttcatggtaaaattaaaca 30515689  T

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