View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18035_high_3 (Length: 562)

Name: NF18035_high_3
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18035_high_3
NF18035_high_3
[»] chr6 (6 HSPs)
chr6 (216-491)||(32046877-32047156)
chr6 (20-119)||(32046542-32046642)
chr6 (159-214)||(32046642-32046697)
chr6 (507-554)||(32047182-32047229)
chr6 (515-554)||(23577167-23577206)
chr6 (519-554)||(32342620-32342655)
[»] chr1 (9 HSPs)
chr1 (373-484)||(38839577-38839688)
chr1 (513-554)||(2534436-2534477)
chr1 (515-555)||(10775179-10775219)
chr1 (512-551)||(44330476-44330515)
chr1 (515-554)||(46080987-46081026)
chr1 (515-554)||(52432677-52432716)
chr1 (515-551)||(5500840-5500876)
chr1 (515-547)||(35660776-35660808)
chr1 (519-551)||(52432853-52432885)
[»] chr5 (7 HSPs)
chr5 (381-467)||(2243250-2243335)
chr5 (515-551)||(2243339-2243375)
chr5 (519-553)||(972849-972883)
chr5 (517-555)||(39730325-39730363)
chr5 (513-550)||(14258902-14258939)
chr5 (513-554)||(40483696-40483736)
chr5 (516-548)||(7215322-7215354)
[»] chr3 (7 HSPs)
chr3 (515-553)||(54437822-54437860)
chr3 (373-466)||(39341247-39341340)
chr3 (519-555)||(42091810-42091846)
chr3 (283-332)||(7938023-7938072)
chr3 (444-484)||(46258513-46258553)
chr3 (511-547)||(51260783-51260819)
chr3 (515-551)||(54437653-54437689)
[»] chr2 (7 HSPs)
chr2 (515-553)||(2248957-2248995)
chr2 (373-483)||(9050212-9050322)
chr2 (515-554)||(16576264-16576303)
chr2 (373-479)||(16576296-16576401)
chr2 (515-553)||(16863472-16863510)
chr2 (375-484)||(34176925-34177034)
chr2 (511-548)||(35371123-35371160)
[»] chr7 (12 HSPs)
chr7 (392-469)||(16971718-16971794)
chr7 (273-360)||(32988558-32988646)
chr7 (373-451)||(3191516-3191594)
chr7 (373-484)||(32962306-32962418)
chr7 (373-435)||(34891581-34891643)
chr7 (385-451)||(42012860-42012926)
chr7 (521-554)||(3191587-3191620)
chr7 (515-555)||(8900669-8900709)
chr7 (515-551)||(29152350-29152386)
chr7 (515-551)||(31152754-31152790)
chr7 (382-478)||(31152823-31152919)
chr7 (515-551)||(31171316-31171352)
[»] chr8 (7 HSPs)
chr8 (515-551)||(37010368-37010404)
chr8 (519-554)||(32166655-32166690)
chr8 (269-350)||(34695771-34695854)
chr8 (411-484)||(12782462-12782535)
chr8 (513-554)||(30547342-30547383)
chr8 (273-361)||(33897516-33897605)
chr8 (381-484)||(29969153-29969257)
[»] scaffold0564 (1 HSPs)
scaffold0564 (520-553)||(5456-5489)
[»] chr4 (2 HSPs)
chr4 (373-486)||(22050900-22051013)
chr4 (515-551)||(44591971-44592007)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 216 - 491
Target Start/End: Original strand, 32046877 - 32047156
Alignment:
Q  216 ttggtttatgctaaccagtataactgagaatatacctttcctacattatcacttttaatgaattggaggtaatttacttctatcaaagaaagattctatt 315  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  32046877 ttggtttatgctaactagtataactgagaacatatctttcctacattatcactt--aatgaattggaggtaatttacttctatcaaagaaaaattctatt 32046974  T
Q  316 ttctttatctttattc-tacaatcaattatcattttaatcttaaaaattt-----cnnnnnnnttcatcttcttcattcaacatgtgatctcctttttct 409  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| |              ||||||||||||||||||||||||||||||||||||    
T  32046975 ttctctatctttattcttacaatcaattatcattttaatcttaaaaatatataaaaaaaaaaactcatcttcttcattcaacatgtgatctcctttttct 32047074  T
Q  410 tcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaatgtaggtctcatcagtag 491  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32047075 tcgttccagaattgaatcctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaatgtaggtcgcatcggtag 32047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 32046542 - 32046642
Alignment:
Q  20 gggtggttgtacatggtgtattgtggaggaggaatacaagttcctaatgaggtaaaggatgagg-nnnnnnngccagattgctatagtgaatctacttat 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  32046542 gggtggttgtacatggtgtactgtggaggaggaatacaagttcctaatgaggtaaaggatgaggaaaaaaaagccagattgctatagtgaatctacttat 32046641  T
Q  119 g 119  Q
    |    
T  32046642 g 32046642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 32046642 - 32046697
Alignment:
Q  159 gagtactagccaagtagataatgtgctagatttatcagagagggtgctgttaaata 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  32046642 gagtactagccaagtagataatgtgctagatttattagagagggtgctattaaata 32046697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 507 - 554
Target Start/End: Original strand, 32047182 - 32047229
Alignment:
Q  507 acattcatttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32047182 acattcatttaccattttcatctcaagaacatcaaacttcttcatctc 32047229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 23577167 - 23577206
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  23577167 ttaccattttcatctcaaaaacatcatacttctccatctc 23577206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 554
Target Start/End: Original strand, 32342620 - 32342655
Alignment:
Q  519 cattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    ||||||||||||||||||||||||||| ||||||||    
T  32342620 cattttcatctcaaaaacatcaaactttttcatctc 32342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 373 - 484
Target Start/End: Complemental strand, 38839688 - 38839577
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggta 472  Q
    |||||||||||||||| |||||||||||   | ||||||||| || ||| |||| ||| || ||| ||| ||| ||||||| ||| ||||||||| ||||    
T  38839688 ttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattaccgtcagttcatcaaggggta 38839589  T
Q  473 atgtaggtctca 484  Q
    ||||||||||||    
T  38839588 atgtaggtctca 38839577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 2534477 - 2534436
Alignment:
Q  513 atttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  2534477 atttaccactttcatctcaaaaacatcaaacttcttcatctc 2534436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 10775179 - 10775219
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctct 555  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  10775179 ttaccattttcatcttaagaacatcaaacttcttcatctct 10775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 551
Target Start/End: Original strand, 44330476 - 44330515
Alignment:
Q  512 catttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  44330476 catttaccattttcatatcaaaaacatcacacttcttcat 44330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 46080987 - 46081026
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  46080987 ttaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 52432677 - 52432716
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  52432677 ttaccattttcatctcaagaacattaaacttcttcatctc 52432716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 5500876 - 5500840
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  5500876 ttaccatttttatctcaaaaacatcaaatttcttcat 5500840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Original strand, 35660776 - 35660808
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttct 547  Q
    ||||||||||||| |||||||||||||||||||    
T  35660776 ttaccattttcatttcaaaaacatcaaacttct 35660808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 551
Target Start/End: Original strand, 52432853 - 52432885
Alignment:
Q  519 cattttcatctcaaaaacatcaaacttcttcat 551  Q
    ||||||| |||||||||||||||||||||||||    
T  52432853 cattttcttctcaaaaacatcaaacttcttcat 52432885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 2243335 - 2243250
Alignment:
Q  381 cttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaag 467  Q
    |||||||||||||||||||||| | |||||||||  ||||| ||||| || |||||| |||| ||||||||||  ||||||||||||    
T  2243335 cttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaaattacc-ccaattcatcaag 2243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 2243375 - 2243339
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2243375 ttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 553
Target Start/End: Original strand, 972849 - 972883
Alignment:
Q  519 cattttcatctcaaaaacatcaaacttcttcatct 553  Q
    |||||||||||||| ||||||||||||||||||||    
T  972849 cattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 555
Target Start/End: Complemental strand, 39730363 - 39730325
Alignment:
Q  517 accattttcatctcaaaaacatcaaacttcttcatctct 555  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctct 39730325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 550
Target Start/End: Complemental strand, 14258939 - 14258902
Alignment:
Q  513 atttaccattttcatctcaaaaacatcaaacttcttca 550  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  14258939 atttatcattttcatctcaaaaacatcaaactttttca 14258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 40483696 - 40483736
Alignment:
Q  513 atttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  40483696 atttactattttcatct-aaaaacatcaaacttcttcatctc 40483736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 548
Target Start/End: Complemental strand, 7215354 - 7215322
Alignment:
Q  516 taccattttcatctcaaaaacatcaaacttctt 548  Q
    ||||||||||||||||| |||||||||||||||    
T  7215354 taccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 54437822 - 54437860
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatct 553  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  54437822 ttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 466
Target Start/End: Original strand, 39341247 - 39341340
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaa 466  Q
    ||||||| |||||||||||||| ||||||| ||| |||||||  | ||||||||  ||||| ||| |||| ||||||||||   ||||||||||    
T  39341247 ttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttatcattagaggtaaattacccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 555
Target Start/End: Complemental strand, 42091846 - 42091810
Alignment:
Q  519 cattttcatctcaaaaacatcaaacttcttcatctct 555  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42091846 cattttcatctcaaaaacatcaaactttttcatctct 42091810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 7938023 - 7938072
Alignment:
Q  283 ggtaatttacttctatcaaagaaagattctattttctttatctttattct 332  Q
    ||||| |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  7938023 ggtaacttacctctatcaaagaaaaattatattttcttcatctttattct 7938072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 46258553 - 46258513
Alignment:
Q  444 gtaaattaccatcaattcatcaagaggtaatgtaggtctca 484  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  46258553 gtaaattacccccaattcatcaaggggtaatgtaggtctca 46258513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 547
Target Start/End: Complemental strand, 51260819 - 51260783
Alignment:
Q  511 tcatttaccattttcatctcaaaaacatcaaacttct 547  Q
    |||||||||||||| |||||| |||||||||||||||    
T  51260819 tcatttaccattttgatctcagaaacatcaaacttct 51260783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Original strand, 54437653 - 54437689
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcat 54437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 2248995 - 2248957
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatct 553  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2248995 ttaccattttcatctcaaaaacattaaacttcttcatct 2248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 483
Target Start/End: Complemental strand, 9050322 - 9050212
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggta 472  Q
    |||||||  |||||| ||||| |||| | | | ||||| |||||| ||| |||| ||| | |||| |||| |||||||||| ||||||||||||||| ||    
T  9050322 ttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagata 9050223  T
Q  473 atgtaggtctc 483  Q
    |||| ||||||    
T  9050222 atgttggtctc 9050212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 16576264 - 16576303
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  16576264 ttaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 479
Target Start/End: Original strand, 16576296 - 16576401
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggta 472  Q
    ||||||| |||||||||||||||||||||||| |  |||||| |||||| ||||  || || ||| |||  |||||||| |  |||||||||||| ||||    
T  16576296 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaattaac-ccaattcatcaaggggta 16576394  T
Q  473 atgtagg 479  Q
    | |||||    
T  16576395 acgtagg 16576401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 16863472 - 16863510
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatct 553  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  16863472 ttaccattttcatctcaagaacatcaaatttcttcatct 16863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 484
Target Start/End: Original strand, 34176925 - 34177034
Alignment:
Q  375 catcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaat 474  Q
    |||||||||||||||||||||||| | | |  ||||| ||||||||||||||  ||||||| | ||   ||||||||||   ||||||||||   |||||    
T  34176925 catcttcttcattcaacatgtgatattcatcctcttcatttcagaattgaatcttatttgttattaagggtaaattacctctaattcatcaatgcgtaat 34177024  T
Q  475 gtaggtctca 484  Q
    |||| |||||    
T  34177025 gtagatctca 34177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 35371123 - 35371160
Alignment:
Q  511 tcatttaccattttcatctcaaaaacatcaaacttctt 548  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  35371123 tcatttaccattttcatatcaagaacatcaaacttctt 35371160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 16971794 - 16971718
Alignment:
Q  392 atgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagag 469  Q
    ||||||||||| ||||||||||| || ||| |||||||| || ||| ||| | ||||||| |||||||||||||||||    
T  16971794 atgtgatctccattttcttcgttgcaaaatcgaattctacttatcattagga-taaattatcatcaattcatcaagag 16971718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 32988646 - 32988558
Alignment:
Q  273 atgaattggaggtaatttacttctatcaaagaaagattctattttctttatctttattc-tacaatcaattatcattttaatcttaaaa 360  Q
    ||||||||| ||||||||||   ||||||||||| ||  ||||||||| |||||||||| ||||||||  ||||||||| |||| ||||    
T  32988646 atgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcattttcatctaaaaa 32988558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 451
Target Start/End: Complemental strand, 3191594 - 3191516
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaatta 451  Q
    ||||||| ||| |||||||||||||||| |  || |||| ||| | ||||||||| ||||||||| ||| |||||||||    
T  3191594 ttcatctcctttattcaacatgtgatcttcagttacttcattttaaaattgaattttatttgtcattaggagtaaatta 3191516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 484
Target Start/End: Complemental strand, 32962418 - 32962306
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtca--atagaagtaaattaccatcaattcatcaagagg 470  Q
    ||||||| ||| ||||||||| |||||| | | || || |||||| ||| ||||  ||||| |||  |||||| |||||||||  |||||||||||| ||    
T  32962418 ttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatcattatagaa-taaattacctccaattcatcaagggg 32962320  T
Q  471 taatgtaggtctca 484  Q
    ||||||||||||||    
T  32962319 taatgtaggtctca 32962306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 34891581 - 34891643
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgt 435  Q
    ||||||| |||||||||||||||||||||| ||| |||||||  | ||||||||  |||||||    
T  34891581 ttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatcttatttgt 34891643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 451
Target Start/End: Original strand, 42012860 - 42012926
Alignment:
Q  385 attcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaatta 451  Q
    |||||||||||||||||| ||| |||||||  |||||| |||  ||||| ||| |||||||||||||    
T  42012860 attcaacatgtgatctccatttacttcgttcaagaattaaatcttatttatcattagaagtaaatta 42012926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 554
Target Start/End: Complemental strand, 3191620 - 3191587
Alignment:
Q  521 ttttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||||||||||| |||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctc 3191587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 8900709 - 8900669
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcatctct 555  Q
    |||||||||| ||||||| |||| |||||||||||||||||    
T  8900709 ttaccatttttatctcaagaacaacaaacttcttcatctct 8900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 29152386 - 29152350
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  29152386 ttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 31152790 - 31152754
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31152790 ttaccattttcatcttaaaaacatcaatcttcttcat 31152754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 31152919 - 31152823
Alignment:
Q  382 ttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaatgtag 478  Q
    ||||||||| ||||||||||| | |  ||||||||| ||| |||| ||| |||| | || | ||||||||||  |||||||||||| | ||||||||    
T  31152919 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtag 31152823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 31171352 - 31171316
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31171352 ttaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 37010404 - 37010368
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37010404 ttaccattttcatctcaaaaacatcaaacttattcat 37010368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 554
Target Start/End: Complemental strand, 32166690 - 32166655
Alignment:
Q  519 cattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||||||||||| |||||||||||||||||||||    
T  32166690 cattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 34695771 - 34695854
Alignment:
Q  269 tttaatgaattggaggtaattta-cttctatcaaagaaagattctattttctttatctttattc-tacaatcaattatcatttt 350  Q
    ||||||||||||  | ||||||| | ||| ||||||||| ||||| ||||||| |||||||||| |||||||| ||||||||||    
T  34695771 tttaatgaattgaggataatttatcctctgtcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcatttt 34695854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 12782462 - 12782535
Alignment:
Q  411 cgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaatgtaggtctca 484  Q
    ||||||||||| |||||||| |||||| |||| |||| ||| | |||||||||  || |||||||| |||||||    
T  12782462 cgtttcagaatcgaattctacttgtcattagaggtaatttatcctcaattcattgaggggtaatgttggtctca 12782535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 30547383 - 30547342
Alignment:
Q  513 atttaccattttcatctcaaaaacatcaaacttcttcatctc 554  Q
    |||||| ||||| |||||||||||| ||||||||||||||||    
T  30547383 atttactatttttatctcaaaaacaacaaacttcttcatctc 30547342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 33897516 - 33897605
Alignment:
Q  273 atgaattggaggtaatttacttctatcaaagaaagattctattttctttatctttattc-tacaatcaattatcattttaatcttaaaaa 361  Q
    ||||||||  |||||||||||| ||||||||||| ||  ||||||||| || ||| ||| || ||||  |||||||||| ||||||||||    
T  33897516 atgaattgagggtaatttacttgtatcaaagaaaaatcatattttcttcatttttcttcttataatcggttatcattttcatcttaaaaa 33897605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 484
Target Start/End: Original strand, 29969153 - 29969257
Alignment:
Q  381 cttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaata-gaagtaaattaccatcaattcatcaagaggtaatgtagg 479  Q
    |||||||||||||||||| | | | |  |||||| || ||| |||||||| |||||| || |  |||||||| |  |||||||||||| |||||||||||    
T  29969153 cttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaaggggtaatgtagg 29969252  T
Q  480 tctca 484  Q
    |||||    
T  29969253 tctca 29969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 5489 - 5456
Alignment:
Q  520 attttcatctcaaaaacatcaaacttcttcatct 553  Q
    |||||||||||||||| |||||||||||||||||    
T  5489 attttcatctcaaaaagatcaaacttcttcatct 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 22050900 - 22051013
Alignment:
Q  373 ttcatcttcttcattcaacatgtgatctcctttttcttcgtttcagaattgaattctatttgtcaatagaagtaaattaccatcaattcatcaagaggta 472  Q
    ||||||| |||||||||||||||||||| | | |  ||| ||||||||| ||||  ||||| ||| ||   ||||||||||  |||||||| ||| ||||    
T  22050900 ttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaattcataaaggggta 22050999  T
Q  473 atgtaggtctcatc 486  Q
     ||||| |||||||    
T  22051000 ttgtagatctcatc 22051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 44592007 - 44591971
Alignment:
Q  515 ttaccattttcatctcaaaaacatcaaacttcttcat 551  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  44592007 ttactattttcatctcaaaaacattaaacttcttcat 44591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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