View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_high_4 (Length: 487)
Name: NF18035_high_4
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 46486936 - 46486493
Alignment:
| Q |
8 |
agagaagaactagaatacatgtgcattgcatgggtgatttagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaagatga |
107 |
Q |
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| T |
46486936 |
agagaagaactagaatacatgtgcattgcatgggtgatatagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaagatga |
46486837 |
T |
|
| Q |
108 |
acttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattattgtat |
207 |
Q |
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| T |
46486836 |
acttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattattgtat |
46486737 |
T |
|
| Q |
208 |
agtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctaaaattctgcactactaaagtcatgacacttatgttgagtttttgtgaca |
307 |
Q |
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| T |
46486736 |
agtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctataattctgcactactaaagtcatgacacttaggttgagtttttgtgaca |
46486637 |
T |
|
| Q |
308 |
aagttcatgtatctttttctttcatgagtttcgagcattgcaacaacatcattcttgtgtgtttttaaatttgtatatatatgaataagattaggatgaa |
407 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46486636 |
aagttcatatatctttttctttcatgagtttcgagcattgcaacaacatcaatcttgtgtgtttttaaatttgtatatatatgaataagattaggatgaa |
46486537 |
T |
|
| Q |
408 |
attaaatttaattttatatccttagttgtgtgccatagcctata |
451 |
Q |
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| T |
46486536 |
attaaatttaattttatatccttagctgtgtgccacagcctata |
46486493 |
T |
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