View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_high_9 (Length: 407)
Name: NF18035_high_9
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 26835291 - 26835666
Alignment:
| Q |
16 |
attggaagacatgaaagccaatcctaagacatgattaatgtttcttgtaaattgtaatcataatatacaagcaaacgtggaagccaatcctaagactagt |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26835291 |
attggaagacataaaagccaatcctaagacatgattaatgtttcttgtaaattgtaatcatgatatacaagcaaacgtggaagccaatcctaagactagt |
26835390 |
T |
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| Q |
116 |
aatgggacagcttgaaaaattggcaaacaattaatcgactaacaaaaagagaacttcaaagagaaagcatggctgaaacttgtgccagattgaccaagnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835391 |
aatgggacagcttgaaaaattggcaaacaattaatcgactaacaaaaagagaacttcaaagagaaagcatggctgaaacttgtgccagattgaccaagaa |
26835490 |
T |
|
| Q |
216 |
nnnnntcatggagataatgatgttaaaataaagcttcagatgtcaagaactagatggcagaataatgacaagacatgtcatggaggaaagaactgctctg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835491 |
aaaaatcatggagataatgatgttaaaataaagcttcagatgtcaagaactagatggcagaataatgacaagacatgtcatggaggaaagaactgctctg |
26835590 |
T |
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| Q |
316 |
aaatcatgttgaagttattgggttagtcttatagttctaattaaataaggaaatgaattatgatatataaggaaac |
391 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835591 |
agatcatgttgaagttattgggttagtcttatagttctaattaaataaggaaatgaattatgatatataaggaaac |
26835666 |
T |
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