View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18035_low_13 (Length: 393)

Name: NF18035_low_13
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18035_low_13
NF18035_low_13
[»] chr4 (4 HSPs)
chr4 (106-374)||(4644641-4644909)
chr4 (6-109)||(4644433-4644536)
chr4 (116-179)||(4636615-4636678)
chr4 (276-374)||(42459080-42459178)
[»] scaffold0481 (1 HSPs)
scaffold0481 (249-374)||(10642-10767)
[»] chr2 (3 HSPs)
chr2 (257-374)||(32467149-32467266)
chr2 (302-367)||(15343063-15343128)
chr2 (324-373)||(21639274-21639323)
[»] chr3 (1 HSPs)
chr3 (248-374)||(27991586-27991712)
[»] chr8 (3 HSPs)
chr8 (285-374)||(14090346-14090435)
chr8 (276-355)||(8269190-8269269)
chr8 (110-192)||(1798146-1798228)
[»] chr5 (1 HSPs)
chr5 (276-374)||(17221686-17221784)
[»] chr7 (2 HSPs)
chr7 (276-374)||(28244475-28244573)
chr7 (323-374)||(20216333-20216384)
[»] chr6 (1 HSPs)
chr6 (331-374)||(25062463-25062506)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 106 - 374
Target Start/End: Original strand, 4644641 - 4644909
Alignment:
Q  106 ctaatctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagattactatgtaaaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4644641 ctaatctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagattactatgtaaaccac 4644740  T
Q  206 cgtgaagtgcacggtgttaatgaaaaaatggatttgatcatcatctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtc 305  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4644741 cgtgaagtgcacggtgttaaagaaaaaatggatttgatcatcatctcccggatcagcccctaaatgttgaatcatcatctccaccgcctcgtcccatgtc 4644840  T
Q  306 atactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  4644841 atactctcgtgggataaaagcataccatcaatggggagatgcagcaaacacgacacatcatcaagtgtc 4644909  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 4644433 - 4644536
Alignment:
Q  6 agcagcacagaatcaatgagttaaatgatgtagagacatatgccacatctcttcaattaaaactcacgagtttgcaggttatgtatacaaagaaagagaa 105  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4644433 agcaacacacaatcaatgagttaaatgatgtagagacatatcccacatctcttcaattaaaactcacgagtttgcaggttatgtaaacaaagaaagagaa 4644532  T
Q  106 ctaa 109  Q
    ||||    
T  4644533 ctaa 4644536  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 4636615 - 4636678
Alignment:
Q  116 atatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgtt 179  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  4636615 atataagttgatatcatttccattgttgatttgattttggaatggaaaaagttgaagaattgtt 4636678  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 42459080 - 42459178
Alignment:
Q  276 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    ||||||||||||||||  ||||||| ||  ||||||| |||||| |||||||| |||||||||| |||| ||| |||||| |||||| |||||||||||    
T  42459080 atcatcatctccaccgtatcgtcccttgaaatactcttgtgggaaaaaagcatgccatcaatggggagacgcatcaaacatgacacatcatcaagtgtc 42459178  T

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Target: scaffold0481 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 374
Target Start/End: Complemental strand, 10767 - 10642
Alignment:
Q  249 tctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgca 348  Q
    |||||||||||||||| |||||| ||||||||||| || |  |||||  ||  |||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  10767 tctcccggatcagcccataaatgttgaatcatcatatcgatagcctccacctttgtcattctctcgtgggacaaaagcataccatcaatggggagatgca 10668  T
Q  349 gcaaacacgacacaacatcaagtgtc 374  Q
    ||||||| |||||| |||||||||||    
T  10667 gcaaacatgacacatcatcaagtgtc 10642  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 374
Target Start/End: Original strand, 32467149 - 32467266
Alignment:
Q  257 atcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacac 356  Q
    |||| |||||||||| |||||||| ||||| ||| ||||| ||  ||||||||| |||||| | |||||||||||||||| || |||||||||||||||     
T  32467149 atcatcccctaaatgttgaatcattatctctaccacctcgacctttgtcatactttcgtggaacaaaagcataccatcaagggggagatgcagcaaacat 32467248  T
Q  357 gacacaacatcaagtgtc 374  Q
    |||||| |||||||||||    
T  32467249 gacacatcatcaagtgtc 32467266  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 15343128 - 15343063
Alignment:
Q  302 tgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatc 367  Q
    |||||||||||| || || |||| || ||||| ||||| ||||||||||||||| |||||| ||||    
T  15343128 tgtcatactctcatgtgacaaaaacaaaccattaatggggagatgcagcaaacatgacacatcatc 15343063  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 21639323 - 21639274
Alignment:
Q  324 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgt 373  Q
    ||||| || ||||||||||||||||||||||| | |||| ||||||||||    
T  21639323 agcatgccgtcaatggagagatgcagcaaacaggccacatcatcaagtgt 21639274  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 27991586 - 27991712
Alignment:
Q  248 atctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgc 347  Q
    ||||||| ||||| |||||||||| | |||||||||||| ||  | ||||||| |||||||| ||||||||| || | ||| |||||||||| ||||| |    
T  27991586 atctccctgatcaacccctaaatgctcaatcatcatctctacaacatcgtcccttgtcataccctcgtgggacaacaacatgccatcaatggggagatcc 27991685  T
Q  348 agcaaacacgacacaacatcaagtgtc 374  Q
    |||||||| |||||| |||||||||||    
T  27991686 agcaaacatgacacatcatcaagtgtc 27991712  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 14090346 - 14090435
Alignment:
Q  285 tccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    |||||||| ||||||||||| ||| |||||||||| | |||||| |||||||||| ||||||||||||||| |||||| |||||||||||    
T  14090346 tccaccgcgtcgtcccatgtgatagtctcgtgggagagaagcatgccatcaatggggagatgcagcaaacatgacacatcatcaagtgtc 14090435  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 8269269 - 8269190
Alignment:
Q  276 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaaca 355  Q
    ||||||||||||||||| | ||||| || |||||||||||| || |||| ||||||||||||||  ||||| ||||||||    
T  8269269 atcatcatctccaccgcattgtcccttgccatactctcgtgtgacaaaaacataccatcaatggtaagatggagcaaaca 8269190  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 1798146 - 1798228
Alignment:
Q  110 tctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagatta 192  Q
    |||||||||||  ||||||||| |||||| ||||||||||| ||||||||   ||| |||||||||| | |||||||||||||    
T  1798146 tctaatatataatttgatatcaattccatggttgatttgatatttgaatgaggaaagttgaagaattatgagtgctgagatta 1798228  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 17221686 - 17221784
Alignment:
Q  276 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    ||||||| ||||||||| ||||||| ||  |||||||||||||| |||| ||| |||||||| | ||||||||||||||| |||||| |||||||||||    
T  17221686 atcatcaactccaccgcatcgtcccttgaaatactctcgtgggacaaaatcatgccatcaatagggagatgcagcaaacaggacacatcatcaagtgtc 17221784  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 28244573 - 28244475
Alignment:
Q  276 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    ||||||||||||||||| ||||| | ||  |||||||||||||| |  ||||| |||||||||| || ||||| |||||| |||||| |||||||||||    
T  28244573 atcatcatctccaccgcatcgtctcttgaaatactctcgtgggacaggagcatgccatcaatggggatatgcaacaaacatgacacatcatcaagtgtc 28244475  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 20216333 - 20216384
Alignment:
Q  323 aagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    |||||| |||||||||| |||||| |||||||| |||||| |||||||||||    
T  20216333 aagcatgccatcaatggggagatgaagcaaacaagacacatcatcaagtgtc 20216384  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 25062463 - 25062506
Alignment:
Q  331 catcaatggagagatgcagcaaacacgacacaacatcaagtgtc 374  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  25062463 catcaatggagagatgaagcaaacatgacacatcatcaagtgtc 25062506  T

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