View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_low_6 (Length: 469)
Name: NF18035_low_6
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 43864948 - 43865403
Alignment:
| Q |
1 |
ttacaaacatggtaattaaactgaaagttgtaactattgatcaattaatttcagtaacagttacaaacatagtaataaaataaaaccttactagaatata |
100 |
Q |
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| T |
43864948 |
ttacaaacatagtaattaaactgaaagttgtaactattgatcaattaatttcactaacagttacaaacatagtaataaaataaaaccttactagaatata |
43865047 |
T |
|
| Q |
101 |
aaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtataataagaaacacaaattagtgt |
200 |
Q |
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| T |
43865048 |
aaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtataataagaaacacaaattagtgt |
43865147 |
T |
|
| Q |
201 |
tgacttgtaacacatatgtcaccttcaatttctgttacacctaattctgtcatggttttcgacacaaatctcagagaaaactatccctcacaatcacaat |
300 |
Q |
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| T |
43865148 |
tgacttgtaacacatatgttaccttcaatttctgttacacctaattctgtcatggttttcgacacaaatctcagagaaaactatccctcacaatcacaat |
43865247 |
T |
|
| Q |
301 |
caatgcatttgcaagaaaactacctgaaaccaaggcagaaagatgagctaattccatttagtgctcactcctgtcatggtaatttcttacaagattttca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43865248 |
caatgcatttgcaagaaaactacctgaaaccaaggcagaaagatgagctaaatccatttagtgctcactcctgtcatggtaatttcttacaagattttca |
43865347 |
T |
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| Q |
401 |
gcatattgatcagtttcatcatatgcatggatcatcatcctccaatcaagtttttg |
456 |
Q |
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| T |
43865348 |
gcatattgagcagtttcatcatatgcatggatcatcatcctccaatcaagtttttg |
43865403 |
T |
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