View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_low_8 (Length: 451)
Name: NF18035_low_8
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 202 - 435
Target Start/End: Original strand, 39936255 - 39936488
Alignment:
| Q |
202 |
gaaacatgaagatttgtcaaatctttaacatatttatgctcttttacaattatattagatgccctataaatgcatgaatttccagcctatatggtagctc |
301 |
Q |
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| T |
39936255 |
gaaacatgaagatttgtcaaatctttaacatatttatgctcttatacaattatattagacgccctataaatacatgaatttccagcctatatggtagctc |
39936354 |
T |
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| Q |
302 |
gtggttgtgaactccacatttgatctcaactttccatcttaaaccatctttcaacaatgttgatctaatttcggatggacaactacactttttagaagca |
401 |
Q |
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| T |
39936355 |
gtggttgtgaactccacatttgatctcaactttccatcttaaaccatctttcaacaatgttgatctaattttggatggacaactacactttttataagca |
39936454 |
T |
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| Q |
402 |
ctttgtgttgaggttttagcttgcttgtaccttc |
435 |
Q |
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| T |
39936455 |
ctttgtgctgaggttttagctggcttgtaccttc |
39936488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 39936032 - 39936216
Alignment:
| Q |
10 |
aatgaatctggatgcgcccaacaaatatctctcaatacatctaagtcgtctcttctattccaactcacagaatctacatcctctattaaattcaacaaat |
109 |
Q |
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| T |
39936032 |
aatgaatctgaatgcgcccaataaatatctctccatacatttaagtcgtctcttctattccaactcacagaatctacatcctctattaaattgaacaaat |
39936131 |
T |
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| Q |
110 |
tttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgatctgaatcacattcta |
194 |
Q |
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| T |
39936132 |
tttgcatctctattctaggacctctcacctctttttccaccatactcctcttcttatatacttggctgatctgaatcacattcta |
39936216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 431
Target Start/End: Complemental strand, 41743346 - 41743221
Alignment:
| Q |
306 |
ttgtgaactccacatttgatctcaactttccatcttaaaccatctttcaacaatgttgatctaatttcggatggacaactacactttttagaagcacttt |
405 |
Q |
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| T |
41743346 |
ttgtgaactctacatttcacctcaattttccatcttatatcatcttttaacggtgttgatctaattttaaaaggacaaccacattttttagaagcacttt |
41743247 |
T |
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| Q |
406 |
gtgttgaggttttagcttgcttgtac |
431 |
Q |
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| T |
41743246 |
atgttgaactttcagcttgtttgtac |
41743221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 262 - 427
Target Start/End: Complemental strand, 40073136 - 40072971
Alignment:
| Q |
262 |
gccctataaatgcatgaatttccagcctatatggtagctcgtggttgtgaactccacatttgatctcaactttccatcttaaaccatctttcaacaatgt |
361 |
Q |
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| T |
40073136 |
gccctgtaaatgcatgaccttccattctattaggtagcatatggttgtgaattccacatttaacctcaacttttcatcccaaaccatttttcaacggtgt |
40073037 |
T |
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| Q |
362 |
tgatctaatttcggatggacaactacactttttagaagcactttgtgttgaggttttagcttgctt |
427 |
Q |
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| T |
40073036 |
tgatctaattttgattgggcaaccacactttttaaaagctctttgtgttgaggtttcaacttgctt |
40072971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 29551333 - 29551248
Alignment:
| Q |
94 |
attaaattcaacaaattttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgat |
179 |
Q |
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| T |
29551333 |
attaaattcatgaaatgttgtatctctgttctaagacctctcgcatcttttttcagcatactcatcttttaatatacttggatgat |
29551248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 435
Target Start/End: Original strand, 19368139 - 19368306
Alignment:
| Q |
269 |
aaatgcatgaatttccagcctatatggtagctcgtggttgtgaactccacatttgatctcaactttccatcttaaaccatctttcaacaatgttgatcta |
368 |
Q |
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|||||||||| ||||| |||| |||| |||||||||||||| ||||||||| | |||||||||||| || ||||||||||||| ||||| |||| |
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| T |
19368139 |
aaatgcatgaccttccaatctatcaggtaactcgtggttgtgaaatccacattttacctcaactttccacctgcgaccatctttcaacggtgttgctcta |
19368238 |
T |
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| Q |
369 |
atttcggatggacaactacactttt-tagaagcactttgtgttgaggttttagcttgcttgtaccttc |
435 |
Q |
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| T |
19368239 |
attttgaatggacaaccgcatttttgttgtagcactttgtgttgagctttcagctcgcttgtaccttc |
19368306 |
T |
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