View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18035_low_9 (Length: 440)
Name: NF18035_low_9
Description: NF18035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18035_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 25702049 - 25701625
Alignment:
| Q |
1 |
attcttcctatttgactgttttatggaatctgtgtgatagtaaaaataattttcttctattaagtaggacgcgaaagaacaatcacacaaaattaaaaca |
100 |
Q |
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| T |
25702049 |
attcttcctatttgagtgttttatggaatctgtgtgatagtaaaaataattttcttctattaagtaggacgtgaaagaacaatcacacaaaattaaaaca |
25701950 |
T |
|
| Q |
101 |
atatgttccttctccataaaaaactaagttgttccttgctaaccaaaaacccacacaacttataaccatacgatatgcttccactttctccacaacaact |
200 |
Q |
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| T |
25701949 |
atatgttccttctccataaaaaactaagttgttccttgctaaccaaaaacccacacaatttataaccatacgatatgcttccactttctccacaacaact |
25701850 |
T |
|
| Q |
201 |
gctattgaacaggcttattaaaaaggttgaatgaatttgggattgagtctaattaccaatgaactgacaagcttacacgaacgatggcattttgccttgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
25701849 |
tctattgaacaggcttattaaaaaggttgaatgaatttgggattgagtctaattaccaatgaactgacaagcttacacgaacaatggcattgtgccttgg |
25701750 |
T |
|
| Q |
301 |
cctttaagaaatcgctggatcaactgcatggcagatgaaatattttcaaaaaaggtaaccattgtgcgtatagagtggctattttggatcttcatttcaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25701749 |
cctttaagaaatcgctggatcaactgcatggcagatgaaatattttcaaaaaaggtaaccattgtgcatatagagtggctattttggatcttcatttcaa |
25701650 |
T |
|
| Q |
401 |
tggacttcattggtggaatcaaatt |
425 |
Q |
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||||||||||||||||||||||||| |
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| T |
25701649 |
tggacttcattggtggaatcaaatt |
25701625 |
T |
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